Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26275 and BPHYT_RS26280 are separated by 145 nucleotides BPHYT_RS26280 and BPHYT_RS26285 are separated by 152 nucleotides BPHYT_RS26285 and BPHYT_RS26290 are separated by 265 nucleotides BPHYT_RS26290 and BPHYT_RS26295 are separated by 207 nucleotides
BPHYT_RS26275: BPHYT_RS26275 - membrane protein, at 1,465,069 to 1,467,102
_RS26275
BPHYT_RS26280: BPHYT_RS26280 - hypothetical protein, at 1,467,248 to 1,467,427
_RS26280
BPHYT_RS26285: BPHYT_RS26285 - glycogen debranching protein, at 1,467,580 to 1,469,796
_RS26285
BPHYT_RS26290: BPHYT_RS26290 - photosystem reaction center subunit H, at 1,470,062 to 1,470,469
_RS26290
BPHYT_RS26295: BPHYT_RS26295 - chemotaxis protein CheY, at 1,470,677 to 1,471,135
_RS26295
Position (kb) 1467
1468
1469
1470 Strain fitness (log2 ratio) -1
0
1
2
3 at 1467.187 kb on - strand at 1467.187 kb on - strand at 1467.250 kb on - strand at 1467.306 kb on - strand, within BPHYT_RS26280 at 1467.379 kb on - strand, within BPHYT_RS26280 at 1467.474 kb on - strand at 1468.155 kb on - strand, within BPHYT_RS26285 at 1468.383 kb on - strand, within BPHYT_RS26285 at 1468.383 kb on - strand, within BPHYT_RS26285 at 1468.857 kb on - strand, within BPHYT_RS26285 at 1469.123 kb on + strand, within BPHYT_RS26285 at 1469.615 kb on + strand at 1469.796 kb on + strand at 1469.797 kb on - strand at 1470.128 kb on + strand, within BPHYT_RS26290 at 1470.256 kb on + strand, within BPHYT_RS26290 at 1470.312 kb on - strand, within BPHYT_RS26290
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 1,467,187 - +1.4 1,467,187 - -1.1 1,467,250 - +0.4 1,467,306 - BPHYT_RS26280 0.32 -0.5 1,467,379 - BPHYT_RS26280 0.73 -1.5 1,467,474 - -1.0 1,468,155 - BPHYT_RS26285 0.26 +3.1 1,468,383 - BPHYT_RS26285 0.36 +0.6 1,468,383 - BPHYT_RS26285 0.36 +1.8 1,468,857 - BPHYT_RS26285 0.58 -0.5 1,469,123 + BPHYT_RS26285 0.70 +0.6 1,469,615 + +0.3 1,469,796 + -0.2 1,469,797 - +0.4 1,470,128 + BPHYT_RS26290 0.16 -1.4 1,470,256 + BPHYT_RS26290 0.48 -0.7 1,470,312 - BPHYT_RS26290 0.61 +1.1
Or see this region's nucleotide sequence