Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25840

Experiment: 36hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25830 and BPHYT_RS25835 are separated by 433 nucleotidesBPHYT_RS25835 and BPHYT_RS25840 are separated by 270 nucleotidesBPHYT_RS25840 and BPHYT_RS25845 are separated by 18 nucleotides BPHYT_RS25830: BPHYT_RS25830 - sugar ABC transporter substrate-binding protein, at 1,369,527 to 1,370,672 _RS25830 BPHYT_RS25835: BPHYT_RS25835 - hypothetical protein, at 1,371,106 to 1,371,393 _RS25835 BPHYT_RS25840: BPHYT_RS25840 - acriflavin resistance protein, at 1,371,664 to 1,374,918 _RS25840 BPHYT_RS25845: BPHYT_RS25845 - RND transporter MFP subunit, at 1,374,937 to 1,376,304 _RS25845 Position (kb) 1371 1372 1373 1374 1375Strain fitness (log2 ratio) -2 -1 0 1 2at 1370.774 kb on + strandat 1370.774 kb on + strandat 1370.778 kb on - strandat 1370.814 kb on + strandat 1370.815 kb on - strandat 1370.818 kb on + strandat 1371.544 kb on + strandat 1371.545 kb on - strandat 1372.053 kb on + strand, within BPHYT_RS25840at 1372.053 kb on + strand, within BPHYT_RS25840at 1372.053 kb on + strand, within BPHYT_RS25840at 1372.058 kb on - strand, within BPHYT_RS25840at 1372.058 kb on - strand, within BPHYT_RS25840at 1372.058 kb on - strand, within BPHYT_RS25840at 1372.227 kb on + strand, within BPHYT_RS25840at 1372.342 kb on + strand, within BPHYT_RS25840at 1372.342 kb on + strand, within BPHYT_RS25840at 1373.531 kb on - strand, within BPHYT_RS25840at 1373.611 kb on + strand, within BPHYT_RS25840at 1374.228 kb on + strand, within BPHYT_RS25840at 1374.335 kb on + strand, within BPHYT_RS25840at 1375.382 kb on - strand, within BPHYT_RS25845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
remove
1,370,774 + +0.9
1,370,774 + +0.3
1,370,778 - -0.2
1,370,814 + -1.5
1,370,815 - +1.6
1,370,818 + -0.2
1,371,544 + +1.0
1,371,545 - +0.0
1,372,053 + BPHYT_RS25840 0.12 +1.5
1,372,053 + BPHYT_RS25840 0.12 +2.2
1,372,053 + BPHYT_RS25840 0.12 -0.9
1,372,058 - BPHYT_RS25840 0.12 -1.5
1,372,058 - BPHYT_RS25840 0.12 -2.1
1,372,058 - BPHYT_RS25840 0.12 -0.4
1,372,227 + BPHYT_RS25840 0.17 -0.2
1,372,342 + BPHYT_RS25840 0.21 -0.1
1,372,342 + BPHYT_RS25840 0.21 +0.2
1,373,531 - BPHYT_RS25840 0.57 -1.6
1,373,611 + BPHYT_RS25840 0.60 -0.6
1,374,228 + BPHYT_RS25840 0.79 +0.3
1,374,335 + BPHYT_RS25840 0.82 -0.3
1,375,382 - BPHYT_RS25845 0.33 -1.2

Or see this region's nucleotide sequence