Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25770 and BPHYT_RS25775 are separated by 74 nucleotides BPHYT_RS25775 and BPHYT_RS25780 are separated by 536 nucleotides BPHYT_RS25780 and BPHYT_RS25785 are separated by 65 nucleotides
BPHYT_RS25770: BPHYT_RS25770 - hypothetical protein, at 1,354,976 to 1,355,398
_RS25770
BPHYT_RS25775: BPHYT_RS25775 - hypothetical protein, at 1,355,473 to 1,355,751
_RS25775
BPHYT_RS25780: BPHYT_RS25780 - DeoR faimly transcriptional regulator, at 1,356,288 to 1,357,013
_RS25780
BPHYT_RS25785: BPHYT_RS25785 - sugar ABC transporter permease, at 1,357,079 to 1,358,137
_RS25785
Position (kb) 1356
1357
1358 Strain fitness (log2 ratio) -1
0
1
2 at 1355.413 kb on + strand at 1355.484 kb on + strand at 1355.923 kb on + strand at 1356.012 kb on + strand at 1356.062 kb on + strand at 1356.062 kb on + strand at 1356.137 kb on + strand at 1356.720 kb on + strand, within BPHYT_RS25780 at 1357.247 kb on - strand, within BPHYT_RS25785 at 1357.665 kb on + strand, within BPHYT_RS25785 at 1357.666 kb on - strand, within BPHYT_RS25785 at 1357.825 kb on - strand, within BPHYT_RS25785
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 1,355,413 + -0.2 1,355,484 + +1.6 1,355,923 + -0.9 1,356,012 + +1.0 1,356,062 + -1.7 1,356,062 + -1.1 1,356,137 + +0.0 1,356,720 + BPHYT_RS25780 0.60 -0.4 1,357,247 - BPHYT_RS25785 0.16 +0.0 1,357,665 + BPHYT_RS25785 0.55 -0.6 1,357,666 - BPHYT_RS25785 0.55 -1.0 1,357,825 - BPHYT_RS25785 0.70 +2.3
Or see this region's nucleotide sequence