Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25740

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25735 and BPHYT_RS25740 are separated by 533 nucleotidesBPHYT_RS25740 and BPHYT_RS25745 are separated by 98 nucleotides BPHYT_RS25735: BPHYT_RS25735 - integrase, at 1,347,027 to 1,348,070 _RS25735 BPHYT_RS25740: BPHYT_RS25740 - hypothetical protein, at 1,348,604 to 1,349,182 _RS25740 BPHYT_RS25745: BPHYT_RS25745 - integrase, at 1,349,281 to 1,350,717 _RS25745 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -1 0 1 2 3at 1347.825 kb on + strand, within BPHYT_RS25735at 1348.033 kb on + strandat 1348.033 kb on + strandat 1348.082 kb on - strandat 1348.100 kb on - strandat 1348.286 kb on + strandat 1348.287 kb on - strandat 1348.339 kb on + strandat 1348.386 kb on - strandat 1348.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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1,347,825 + BPHYT_RS25735 0.76 -1.0
1,348,033 + -0.2
1,348,033 + +3.6
1,348,082 - -0.2
1,348,100 - +0.4
1,348,286 + +1.4
1,348,287 - +0.1
1,348,339 + +0.4
1,348,386 - -1.3
1,348,460 - +2.6

Or see this region's nucleotide sequence