Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24270

Experiment: 36hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS24265 and BPHYT_RS24270 are separated by 210 nucleotidesBPHYT_RS24270 and BPHYT_RS24275 are separated by 193 nucleotides BPHYT_RS24265: BPHYT_RS24265 - transporter, at 1,009,262 to 1,010,149 _RS24265 BPHYT_RS24270: BPHYT_RS24270 - C4-dicarboxylate ABC transporter substrate-binding protein, at 1,010,360 to 1,011,436 _RS24270 BPHYT_RS24275: BPHYT_RS24275 - alpha-ketoglutarate decarboxylase, at 1,011,630 to 1,012,904 _RS24275 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -1 0 1 2at 1010.208 kb on - strandat 1010.361 kb on + strandat 1010.362 kb on - strandat 1010.650 kb on - strand, within BPHYT_RS24270at 1010.739 kb on + strand, within BPHYT_RS24270at 1011.087 kb on + strand, within BPHYT_RS24270at 1011.321 kb on + strand, within BPHYT_RS24270at 1011.449 kb on + strandat 1012.379 kb on - strand, within BPHYT_RS24275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
remove
1,010,208 - +0.3
1,010,361 + +1.0
1,010,362 - -1.6
1,010,650 - BPHYT_RS24270 0.27 +0.4
1,010,739 + BPHYT_RS24270 0.35 -0.7
1,011,087 + BPHYT_RS24270 0.68 +2.0
1,011,321 + BPHYT_RS24270 0.89 -1.4
1,011,449 + -0.7
1,012,379 - BPHYT_RS24275 0.59 -0.3

Or see this region's nucleotide sequence