Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23820 and BPHYT_RS23825 are separated by 170 nucleotides BPHYT_RS23825 and BPHYT_RS23830 are separated by 190 nucleotides
BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332
_RS23820
BPHYT_RS23825: BPHYT_RS23825 - hypothetical protein, at 913,503 to 913,718
_RS23825
BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423
_RS23830
Position (kb) 913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 912.556 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.571 kb on + strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.572 kb on - strand, within BPHYT_RS23820 at 912.577 kb on + strand, within BPHYT_RS23820 at 912.733 kb on + strand, within BPHYT_RS23820 at 912.876 kb on - strand, within BPHYT_RS23820 at 913.373 kb on - strand at 913.430 kb on - strand at 913.431 kb on + strand at 913.432 kb on - strand at 913.486 kb on - strand at 913.607 kb on + strand, within BPHYT_RS23825 at 913.649 kb on + strand, within BPHYT_RS23825 at 913.650 kb on - strand, within BPHYT_RS23825 at 913.704 kb on + strand at 913.736 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.890 kb on + strand at 913.912 kb on + strand at 914.301 kb on + strand, within BPHYT_RS23830 at 914.658 kb on - strand, within BPHYT_RS23830
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 912,556 + BPHYT_RS23820 0.64 -0.2 912,571 + BPHYT_RS23820 0.65 -0.7 912,571 + BPHYT_RS23820 0.65 +0.1 912,571 + BPHYT_RS23820 0.65 +0.9 912,572 - BPHYT_RS23820 0.65 -2.8 912,572 - BPHYT_RS23820 0.65 -0.6 912,572 - BPHYT_RS23820 0.65 -0.4 912,572 - BPHYT_RS23820 0.65 +0.6 912,572 - BPHYT_RS23820 0.65 -0.9 912,572 - BPHYT_RS23820 0.65 -0.6 912,577 + BPHYT_RS23820 0.65 -1.4 912,733 + BPHYT_RS23820 0.72 +0.3 912,876 - BPHYT_RS23820 0.79 -0.2 913,373 - -1.1 913,430 - -0.0 913,431 + +2.5 913,432 - +0.1 913,486 - +0.0 913,607 + BPHYT_RS23825 0.48 +0.7 913,649 + BPHYT_RS23825 0.68 +0.1 913,650 - BPHYT_RS23825 0.68 +2.1 913,704 + -0.6 913,736 - -0.0 913,745 - -0.2 913,745 - +0.9 913,745 - -0.5 913,890 + -1.6 913,912 + +1.6 914,301 + BPHYT_RS23830 0.26 +1.4 914,658 - BPHYT_RS23830 0.49 -0.3
Or see this region's nucleotide sequence