Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23645 and BPHYT_RS23650 are separated by 160 nucleotides BPHYT_RS23650 and BPHYT_RS23655 are separated by 90 nucleotides BPHYT_RS23655 and BPHYT_RS23660 are separated by 60 nucleotides
BPHYT_RS23645: BPHYT_RS23645 - phosphohydrolase, at 875,586 to 876,230
_RS23645
BPHYT_RS23650: BPHYT_RS23650 - hypothetical protein, at 876,391 to 876,729
_RS23650
BPHYT_RS23655: BPHYT_RS23655 - peroxiredoxin, at 876,820 to 877,296
_RS23655
BPHYT_RS23660: BPHYT_RS23660 - manganese transporter, at 877,357 to 879,015
_RS23660
Position (kb) 876
877
878 Strain fitness (log2 ratio) -1
0
1
2 at 876.037 kb on - strand, within BPHYT_RS23645 at 876.170 kb on - strand at 876.260 kb on + strand at 876.324 kb on + strand at 876.325 kb on - strand at 876.327 kb on + strand at 876.412 kb on - strand at 876.519 kb on + strand, within BPHYT_RS23650 at 876.727 kb on + strand at 876.728 kb on - strand at 876.827 kb on - strand at 876.837 kb on + strand at 876.838 kb on - strand at 876.841 kb on + strand at 876.841 kb on + strand at 876.842 kb on - strand at 876.842 kb on - strand at 876.842 kb on - strand at 877.232 kb on - strand, within BPHYT_RS23655 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.696 kb on + strand, within BPHYT_RS23660 at 877.697 kb on - strand, within BPHYT_RS23660 at 877.916 kb on + strand, within BPHYT_RS23660 at 877.925 kb on + strand, within BPHYT_RS23660 at 878.232 kb on - strand, within BPHYT_RS23660 at 878.270 kb on + strand, within BPHYT_RS23660 at 878.271 kb on - strand, within BPHYT_RS23660
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 876,037 - BPHYT_RS23645 0.70 -1.4 876,170 - -0.0 876,260 + -1.1 876,324 + +1.6 876,325 - -1.2 876,327 + -0.1 876,412 - +0.3 876,519 + BPHYT_RS23650 0.38 -1.4 876,727 + +0.2 876,728 - +1.1 876,827 - -0.0 876,837 + +0.5 876,838 - +1.3 876,841 + +2.2 876,841 + +0.2 876,842 - -1.2 876,842 - -0.6 876,842 - -0.8 877,232 - BPHYT_RS23655 0.86 -0.3 877,696 + BPHYT_RS23660 0.20 +1.1 877,696 + BPHYT_RS23660 0.20 -1.3 877,697 - BPHYT_RS23660 0.20 +1.3 877,916 + BPHYT_RS23660 0.34 +0.3 877,925 + BPHYT_RS23660 0.34 -1.0 878,232 - BPHYT_RS23660 0.53 +1.2 878,270 + BPHYT_RS23660 0.55 -0.5 878,271 - BPHYT_RS23660 0.55 +1.9
Or see this region's nucleotide sequence