Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22590 and BPHYT_RS22595 are separated by 27 nucleotides BPHYT_RS22595 and BPHYT_RS22600 are separated by 302 nucleotides BPHYT_RS22600 and BPHYT_RS22605 are separated by 155 nucleotides BPHYT_RS22605 and BPHYT_RS22610 are separated by 213 nucleotides
BPHYT_RS22590: BPHYT_RS22590 - hypothetical protein, at 627,493 to 627,861
_RS22590
BPHYT_RS22595: BPHYT_RS22595 - hypothetical protein, at 627,889 to 628,107
_RS22595
BPHYT_RS22600: BPHYT_RS22600 - transport protein RbsD/FucU, at 628,410 to 628,874
_RS22600
BPHYT_RS22605: BPHYT_RS22605 - virulence protein, at 629,030 to 629,437
_RS22605
BPHYT_RS22610: BPHYT_RS22610 - quinol oxidase, at 629,651 to 630,082
_RS22610
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.439 kb on + strand at 627.524 kb on - strand at 628.761 kb on + strand, within BPHYT_RS22600 at 628.782 kb on + strand, within BPHYT_RS22600 at 628.783 kb on - strand, within BPHYT_RS22600 at 628.783 kb on - strand, within BPHYT_RS22600 at 628.816 kb on - strand, within BPHYT_RS22600 at 628.873 kb on - strand at 628.929 kb on + strand at 629.110 kb on + strand, within BPHYT_RS22605 at 629.110 kb on + strand, within BPHYT_RS22605 at 629.111 kb on - strand, within BPHYT_RS22605 at 629.111 kb on - strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.424 kb on - strand at 629.433 kb on + strand at 629.435 kb on + strand at 629.436 kb on - strand at 629.436 kb on - strand at 629.436 kb on - strand at 629.554 kb on + strand at 629.630 kb on - strand at 629.638 kb on - strand at 629.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 627,439 + -0.4 627,524 - +0.8 628,761 + BPHYT_RS22600 0.75 +1.3 628,782 + BPHYT_RS22600 0.80 +1.0 628,783 - BPHYT_RS22600 0.80 -0.1 628,783 - BPHYT_RS22600 0.80 +0.2 628,816 - BPHYT_RS22600 0.87 -0.9 628,873 - -0.1 628,929 + +1.1 629,110 + BPHYT_RS22605 0.20 +0.6 629,110 + BPHYT_RS22605 0.20 -1.3 629,111 - BPHYT_RS22605 0.20 +0.4 629,111 - BPHYT_RS22605 0.20 -0.2 629,381 + BPHYT_RS22605 0.86 +0.7 629,381 + BPHYT_RS22605 0.86 -0.1 629,381 + BPHYT_RS22605 0.86 +0.3 629,424 - -0.4 629,433 + +0.4 629,435 + +0.1 629,436 - +3.7 629,436 - -1.8 629,436 - -0.4 629,554 + +0.8 629,630 - -0.2 629,638 - -0.1 629,692 + -0.5
Or see this region's nucleotide sequence