Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21700 and BPHYT_RS21705 are separated by 148 nucleotides BPHYT_RS21705 and BPHYT_RS21710 are separated by 187 nucleotides
BPHYT_RS21700: BPHYT_RS21700 - phosphotransacetylase, at 423,371 to 424,405
_RS21700
BPHYT_RS21705: BPHYT_RS21705 - sulfoacetaldehyde acetyltransferase, at 424,554 to 426,386
_RS21705
BPHYT_RS21710: BPHYT_RS21710 - DeoR faimly transcriptional regulator, at 426,574 to 428,007
_RS21710
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -1
0
1
2 at 424.189 kb on + strand, within BPHYT_RS21700 at 424.190 kb on - strand, within BPHYT_RS21700 at 424.406 kb on - strand at 424.561 kb on + strand at 424.562 kb on - strand at 424.570 kb on + strand at 424.813 kb on + strand, within BPHYT_RS21705 at 424.945 kb on + strand, within BPHYT_RS21705 at 424.946 kb on - strand, within BPHYT_RS21705 at 425.065 kb on + strand, within BPHYT_RS21705 at 425.167 kb on + strand, within BPHYT_RS21705 at 425.633 kb on - strand, within BPHYT_RS21705 at 425.633 kb on - strand, within BPHYT_RS21705 at 425.837 kb on - strand, within BPHYT_RS21705 at 425.950 kb on + strand, within BPHYT_RS21705 at 425.951 kb on - strand, within BPHYT_RS21705 at 426.065 kb on - strand, within BPHYT_RS21705 at 426.594 kb on - strand at 427.076 kb on - strand, within BPHYT_RS21710 at 427.298 kb on + strand, within BPHYT_RS21710 at 427.330 kb on - strand, within BPHYT_RS21710
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 424,189 + BPHYT_RS21700 0.79 -1.2 424,190 - BPHYT_RS21700 0.79 +1.6 424,406 - +0.4 424,561 + +0.3 424,562 - -0.3 424,570 + -0.1 424,813 + BPHYT_RS21705 0.14 +2.2 424,945 + BPHYT_RS21705 0.21 +2.7 424,946 - BPHYT_RS21705 0.21 +0.6 425,065 + BPHYT_RS21705 0.28 +1.2 425,167 + BPHYT_RS21705 0.33 +0.4 425,633 - BPHYT_RS21705 0.59 -0.3 425,633 - BPHYT_RS21705 0.59 +0.1 425,837 - BPHYT_RS21705 0.70 -1.2 425,950 + BPHYT_RS21705 0.76 -1.5 425,951 - BPHYT_RS21705 0.76 -0.9 426,065 - BPHYT_RS21705 0.82 +0.6 426,594 - +0.9 427,076 - BPHYT_RS21710 0.35 -0.5 427,298 + BPHYT_RS21710 0.50 -1.4 427,330 - BPHYT_RS21710 0.53 +0.4
Or see this region's nucleotide sequence