Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21330 and BPHYT_RS21335 are separated by 246 nucleotides BPHYT_RS21335 and BPHYT_RS21340 overlap by 4 nucleotides BPHYT_RS21340 and BPHYT_RS21345 overlap by 4 nucleotides
BPHYT_RS21330: BPHYT_RS21330 - hypothetical protein, at 345,059 to 345,493
_RS21330
BPHYT_RS21335: BPHYT_RS21335 - CDP-alcohol phosphatidyltransferase, at 345,740 to 346,441
_RS21335
BPHYT_RS21340: BPHYT_RS21340 - 2OG-Fe(II) oxygenase, at 346,438 to 347,250
_RS21340
BPHYT_RS21345: BPHYT_RS21345 - membrane protein, at 347,247 to 348,266
_RS21345
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 344.748 kb on + strand at 344.812 kb on + strand at 344.812 kb on + strand at 344.868 kb on - strand at 344.943 kb on + strand at 344.943 kb on + strand at 344.944 kb on - strand at 344.984 kb on + strand at 344.984 kb on + strand at 344.984 kb on + strand at 344.985 kb on - strand at 344.987 kb on - strand at 344.994 kb on - strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.086 kb on - strand at 345.270 kb on + strand, within BPHYT_RS21330 at 345.429 kb on + strand, within BPHYT_RS21330 at 345.494 kb on - strand at 345.521 kb on + strand at 345.521 kb on + strand at 345.522 kb on - strand at 345.612 kb on + strand at 345.612 kb on + strand at 345.612 kb on + strand at 345.654 kb on - strand at 345.724 kb on + strand at 345.724 kb on + strand at 345.724 kb on + strand at 345.727 kb on - strand at 345.727 kb on - strand at 345.728 kb on + strand at 345.728 kb on + strand at 345.728 kb on + strand at 345.970 kb on + strand, within BPHYT_RS21335 at 346.443 kb on + strand at 346.482 kb on - strand at 346.482 kb on - strand at 346.725 kb on + strand, within BPHYT_RS21340 at 346.726 kb on - strand, within BPHYT_RS21340 at 346.855 kb on + strand, within BPHYT_RS21340 at 346.858 kb on + strand, within BPHYT_RS21340 at 346.858 kb on + strand, within BPHYT_RS21340 at 346.859 kb on - strand, within BPHYT_RS21340 at 346.899 kb on + strand, within BPHYT_RS21340 at 346.927 kb on - strand, within BPHYT_RS21340
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 344,748 + -1.2 344,812 + +0.2 344,812 + +0.7 344,868 - -0.4 344,943 + +0.5 344,943 + -1.5 344,944 - +0.3 344,984 + -0.0 344,984 + -0.7 344,984 + -0.8 344,985 - -0.8 344,987 - -0.9 344,994 - +0.6 345,009 + -1.3 345,009 + -0.5 345,009 + +0.4 345,009 + -0.3 345,010 - -0.5 345,010 - -0.8 345,086 - -1.5 345,270 + BPHYT_RS21330 0.49 +0.8 345,429 + BPHYT_RS21330 0.85 -1.2 345,494 - +0.4 345,521 + +0.3 345,521 + +0.1 345,522 - +1.3 345,612 + +0.2 345,612 + -3.1 345,612 + +0.4 345,654 - +1.0 345,724 + -0.2 345,724 + +1.1 345,724 + -0.6 345,727 - +0.4 345,727 - +1.0 345,728 + +0.0 345,728 + -0.7 345,728 + +0.1 345,970 + BPHYT_RS21335 0.33 -3.0 346,443 + +1.1 346,482 - +2.7 346,482 - +2.7 346,725 + BPHYT_RS21340 0.35 -0.3 346,726 - BPHYT_RS21340 0.35 +2.7 346,855 + BPHYT_RS21340 0.51 +0.1 346,858 + BPHYT_RS21340 0.52 +1.1 346,858 + BPHYT_RS21340 0.52 +2.7 346,859 - BPHYT_RS21340 0.52 +1.1 346,899 + BPHYT_RS21340 0.57 -0.5 346,927 - BPHYT_RS21340 0.60 +0.3
Or see this region's nucleotide sequence