Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20810

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20805 and BPHYT_RS20810 are separated by 59 nucleotidesBPHYT_RS20810 and BPHYT_RS20815 are separated by 18 nucleotides BPHYT_RS20805: BPHYT_RS20805 - LacI family transcriptional regulator, at 230,445 to 231,524 _RS20805 BPHYT_RS20810: BPHYT_RS20810 - ABC transporter permease, at 231,584 to 232,549 _RS20810 BPHYT_RS20815: BPHYT_RS20815 - ABC transporter ATP-binding protein, at 232,568 to 234,067 _RS20815 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.817 kb on + strand, within BPHYT_RS20805at 230.817 kb on + strand, within BPHYT_RS20805at 230.818 kb on - strand, within BPHYT_RS20805at 232.142 kb on - strand, within BPHYT_RS20810at 232.289 kb on + strand, within BPHYT_RS20810at 232.290 kb on - strand, within BPHYT_RS20810at 232.547 kb on + strandat 232.548 kb on - strandat 232.811 kb on + strand, within BPHYT_RS20815at 232.811 kb on + strand, within BPHYT_RS20815at 232.812 kb on - strand, within BPHYT_RS20815at 232.974 kb on + strand, within BPHYT_RS20815at 233.207 kb on + strand, within BPHYT_RS20815at 233.309 kb on + strand, within BPHYT_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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230,817 + BPHYT_RS20805 0.34 +2.5
230,817 + BPHYT_RS20805 0.34 -0.4
230,818 - BPHYT_RS20805 0.35 +0.1
232,142 - BPHYT_RS20810 0.58 +0.4
232,289 + BPHYT_RS20810 0.73 +0.5
232,290 - BPHYT_RS20810 0.73 -0.1
232,547 + -0.2
232,548 - +0.9
232,811 + BPHYT_RS20815 0.16 +1.5
232,811 + BPHYT_RS20815 0.16 +0.1
232,812 - BPHYT_RS20815 0.16 +0.1
232,974 + BPHYT_RS20815 0.27 -1.9
233,207 + BPHYT_RS20815 0.43 +0.5
233,309 + BPHYT_RS20815 0.49 +0.5

Or see this region's nucleotide sequence