Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20165

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20160 and BPHYT_RS20165 overlap by 1 nucleotidesBPHYT_RS20165 and BPHYT_RS20170 are separated by 168 nucleotides BPHYT_RS20160: BPHYT_RS20160 - hypothetical protein, at 65,399 to 66,730 _RS20160 BPHYT_RS20165: BPHYT_RS20165 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 66,730 to 67,968 _RS20165 BPHYT_RS20170: BPHYT_RS20170 - sugar transporter, at 68,137 to 70,359 _RS20170 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.842 kb on + strand, within BPHYT_RS20160at 65.858 kb on - strand, within BPHYT_RS20160at 66.288 kb on + strand, within BPHYT_RS20160at 66.436 kb on - strandat 66.580 kb on - strand, within BPHYT_RS20160at 66.750 kb on + strandat 66.965 kb on - strand, within BPHYT_RS20165at 67.514 kb on - strand, within BPHYT_RS20165at 67.676 kb on - strand, within BPHYT_RS20165at 67.728 kb on + strand, within BPHYT_RS20165at 68.162 kb on + strandat 68.450 kb on - strand, within BPHYT_RS20170at 68.727 kb on + strand, within BPHYT_RS20170

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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65,842 + BPHYT_RS20160 0.33 +0.1
65,858 - BPHYT_RS20160 0.34 -0.2
66,288 + BPHYT_RS20160 0.67 +0.2
66,436 - +2.7
66,580 - BPHYT_RS20160 0.89 +0.5
66,750 + +0.1
66,965 - BPHYT_RS20165 0.19 +0.4
67,514 - BPHYT_RS20165 0.63 -2.1
67,676 - BPHYT_RS20165 0.76 +0.1
67,728 + BPHYT_RS20165 0.81 -0.9
68,162 + -0.6
68,450 - BPHYT_RS20170 0.14 +1.5
68,727 + BPHYT_RS20170 0.27 +0.1

Or see this region's nucleotide sequence