Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18385

Experiment: 36hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO7 MOI 1
4,133,515	+				-1.3
4,133,516	-				-0.7
4,133,516	-				+1.4
4,133,516	-				+0.0
4,133,609	-				+2.6
4,133,621	+				+0.1
4,133,621	+				+0.6
4,133,622	-				+0.0
4,133,625	+				+0.3
4,133,626	-				-1.2
4,133,626	-				-1.3
4,133,626	-				+0.3
4,134,066	-				+1.4
4,134,081	-				+0.3
4,134,081	-				+2.2
4,134,277	-				-0.3
4,134,332	+				+0.4
4,134,332	+				-0.5
4,134,391	-				+0.4
4,134,391	-				+0.5
4,134,391	-				-0.4
4,134,391	-				-0.3
4,134,394	-				+0.4
4,134,430	+				-0.7
4,134,430	+				+0.4
4,134,431	-				+0.5
4,134,431	-				-0.6
4,134,434	+				-0.1
4,134,434	+				-2.4
4,134,434	+				-1.7
4,134,434	+				+0.3
4,134,434	+				+1.1
4,134,434	+				+0.1
4,134,435	-				+1.6
4,134,435	-				+0.8
4,134,478	-				+0.3
4,134,488	+				+0.3
4,134,489	-				+0.3
4,134,489	-				-0.1
4,134,505	-				-0.2
4,134,571	-				-0.1
4,134,703	+		BPHYT_RS18385	0.25	+0.2
4,134,703	+		BPHYT_RS18385	0.25	-0.2
4,134,757	+		BPHYT_RS18385	0.32	-0.6
4,134,757	+		BPHYT_RS18385	0.32	-1.1
4,134,758	-		BPHYT_RS18385	0.33	+1.6
4,134,758	-		BPHYT_RS18385	0.33	+1.2
4,134,928	+		BPHYT_RS18385	0.55	+0.3
4,135,039	+		BPHYT_RS18385	0.70	+0.8
4,135,039	+		BPHYT_RS18385	0.70	+0.8
4,135,338	-				-0.4
4,135,818	+		BPHYT_RS18390	0.37	-1.6
4,135,907	+		BPHYT_RS18390	0.47	+0.5
4,135,907	+		BPHYT_RS18390	0.47	+0.0
4,135,908	-		BPHYT_RS18390	0.47	+0.4
4,135,908	-		BPHYT_RS18390	0.47	+0.2
4,135,944	-		BPHYT_RS18390	0.51	-0.5
4,136,016	+		BPHYT_RS18390	0.59	-1.2
4,136,076	+		BPHYT_RS18390	0.65	+3.2
4,136,145	-		BPHYT_RS18390	0.72	-0.2
4,136,145	-				+2.6
4,136,175	-		BPHYT_RS18390	0.76	-0.2