Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18375

Experiment: 36hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO7 MOI 1
4,132,678	+				+0.2
4,132,679	-				-0.1
4,132,692	+				-0.5
4,132,693	-				-0.1
4,132,746	+				+0.4
4,132,747	-				-0.2
4,132,747	-				-1.5
4,132,781	-				+1.4
4,132,781	-				-0.7
4,132,781	-				+0.0
4,132,834	+		BPHYT_RS18370	0.10	+0.1
4,132,967	+		BPHYT_RS18370	0.28	+0.1
4,132,968	-		BPHYT_RS18370	0.28	-0.2
4,132,976	-		BPHYT_RS18370	0.29	+0.0
4,132,976	-		BPHYT_RS18370	0.29	+1.1
4,133,113	+		BPHYT_RS18370	0.47	-0.3
4,133,114	-		BPHYT_RS18370	0.47	-1.1
4,133,114	-		BPHYT_RS18370	0.47	-1.3
4,133,196	-		BPHYT_RS18370	0.58	-0.6
4,133,228	-		BPHYT_RS18370	0.62	-0.7
4,133,313	-		BPHYT_RS18370	0.73	+0.3
4,133,410	-		BPHYT_RS18370	0.86	-0.2
4,133,515	+				-1.3
4,133,516	-				-0.7
4,133,516	-				+1.4
4,133,516	-				+0.0
4,133,609	-				+2.6
4,133,621	+				+0.1
4,133,621	+				+0.6
4,133,622	-				+0.0
4,133,625	+				+0.3
4,133,626	-				-1.2
4,133,626	-				-1.3
4,133,626	-				+0.3
4,134,066	-				+1.4
4,134,081	-				+0.3
4,134,081	-				+2.2
4,134,277	-				-0.3
4,134,332	+				+0.4
4,134,332	+				-0.5
4,134,391	-				+0.4
4,134,391	-				+0.5
4,134,391	-				-0.4
4,134,391	-				-0.3
4,134,394	-				+0.4
4,134,430	+				-0.7
4,134,430	+				+0.4
4,134,431	-				+0.5
4,134,431	-				-0.6
4,134,434	+				-0.1
4,134,434	+				-2.4
4,134,434	+				-1.7
4,134,434	+				+0.3
4,134,434	+				+1.1
4,134,434	+				+0.1
4,134,435	-				+1.6
4,134,435	-				+0.8
4,134,478	-				+0.3
4,134,488	+				+0.3
4,134,489	-				+0.3
4,134,489	-				-0.1
4,134,505	-				-0.2
4,134,571	-				-0.1
4,134,703	+		BPHYT_RS18385	0.25	+0.2
4,134,703	+		BPHYT_RS18385	0.25	-0.2
4,134,757	+		BPHYT_RS18385	0.32	-0.6
4,134,757	+		BPHYT_RS18385	0.32	-1.1
4,134,758	-		BPHYT_RS18385	0.33	+1.6
4,134,758	-		BPHYT_RS18385	0.33	+1.2