Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13825

Experiment: 36hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO7 MOI 1
3,152,348	-		BPHYT_RS13820	0.75	-1.3
3,152,348	-		BPHYT_RS13820	0.75	-0.2
3,152,386	-		BPHYT_RS13820	0.77	-0.7
3,152,528	-		BPHYT_RS13820	0.86	-1.1
3,152,559	-		BPHYT_RS13820	0.88	-0.9
3,152,718	+				-0.1
3,152,763	-				-0.6
3,152,781	+				-0.5
3,152,819	-				-0.6
3,152,819	-				-1.2
3,152,985	+				+1.0
3,152,985	+				-2.0
3,152,987	+				+0.1
3,153,014	+				-0.5
3,153,015	-				-2.5
3,153,015	-				-0.3
3,153,015	-				-0.6
3,153,016	+				+0.7
3,153,016	+				+0.2
3,153,017	-				-0.3
3,153,042	-				-0.2
3,153,119	+				-0.4
3,153,120	-				-0.4
3,153,194	+				-0.0
3,153,195	-				-0.2
3,153,297	-				+0.8
3,153,297	-				+0.5
3,153,301	+				+0.1
3,153,405	-				-1.1
3,153,540	-		BPHYT_RS13825	0.19	-0.8
3,153,583	+				+1.0
3,153,583	+		BPHYT_RS13825	0.22	+1.0
3,153,935	+		BPHYT_RS13825	0.50	+0.6
3,153,936	-		BPHYT_RS13825	0.50	-0.4
3,154,055	+		BPHYT_RS13825	0.60	+0.4
3,154,056	-		BPHYT_RS13825	0.60	-0.5
3,154,076	+		BPHYT_RS13825	0.61	+0.3
3,154,076	+		BPHYT_RS13825	0.61	-0.2
3,154,077	-		BPHYT_RS13825	0.62	-0.7
3,154,211	+		BPHYT_RS13825	0.72	+0.3
3,154,211	+		BPHYT_RS13825	0.72	-2.0
3,154,211	+		BPHYT_RS13825	0.72	-0.0
3,154,212	-		BPHYT_RS13825	0.72	-0.3
3,154,212	-		BPHYT_RS13825	0.72	+0.2
3,154,212	-		BPHYT_RS13825	0.72	-0.6
3,154,347	-		BPHYT_RS13825	0.83	+0.0
3,154,472	+				-0.1
3,154,472	+				-0.3
3,154,473	-				+0.2
3,154,473	-				+0.1
3,154,473	-				-0.7
3,154,473	-				+0.4
3,154,473	-				+0.7
3,154,478	+				-1.0
3,154,481	-				-0.5
3,154,481	-				-0.1
3,154,837	+				-0.4
3,154,837	+				+0.7
3,154,838	-				+0.4
3,155,047	+		BPHYT_RS13830	0.11	+0.3
3,155,047	+		BPHYT_RS13830	0.11	+0.1
3,155,047	+		BPHYT_RS13830	0.11	-1.1
3,155,047	+		BPHYT_RS13830	0.11	-0.9
3,155,048	-		BPHYT_RS13830	0.12	-1.6
3,155,048	-		BPHYT_RS13830	0.12	-0.7
3,155,048	-		BPHYT_RS13830	0.12	-0.4
3,155,048	-		BPHYT_RS13830	0.12	+0.4
3,155,048	-		BPHYT_RS13830	0.12	-0.9
3,155,048	-		BPHYT_RS13830	0.12	-0.9
3,155,086	+		BPHYT_RS13830	0.14	-0.6
3,155,086	+		BPHYT_RS13830	0.14	+0.2
3,155,159	+		BPHYT_RS13830	0.17	-1.7
3,155,159	+		BPHYT_RS13830	0.17	-1.1
3,155,159	+		BPHYT_RS13830	0.17	-0.4
3,155,160	-		BPHYT_RS13830	0.17	+0.0
3,155,171	-		BPHYT_RS13830	0.18	+0.3
3,155,452	+		BPHYT_RS13830	0.33	+1.6
3,155,452	+		BPHYT_RS13830	0.33	+0.9
3,155,452	+		BPHYT_RS13830	0.33	-0.9
3,155,536	+		BPHYT_RS13830	0.37	-0.4
3,155,536	+		BPHYT_RS13830	0.37	-1.0
3,155,537	-		BPHYT_RS13830	0.37	+0.1
3,155,545	+		BPHYT_RS13830	0.38	-0.3