Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12280

Experiment: 36hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO7 MOI 1
2,803,086	-				+0.1
2,803,218	+				-2.8
2,803,218	+				-1.8
2,803,435	+		BPHYT_RS12275	0.61	-0.5
2,803,435	+		BPHYT_RS12275	0.61	+0.2
2,803,441	+		BPHYT_RS12275	0.63	+0.2
2,803,441	+		BPHYT_RS12275	0.63	+0.4
2,803,441	+		BPHYT_RS12275	0.63	-2.9
2,803,495	+		BPHYT_RS12275	0.83	-0.7
2,803,705	-				-2.4
2,803,707	+				-0.4
2,803,733	+				-0.1
2,803,734	-				-2.0
2,803,734	-				-0.6
2,804,007	+				-0.5
2,804,042	+				-0.6
2,804,042	+				+3.6
2,804,053	+				-0.2
2,804,607	+		BPHYT_RS12280	0.33	-2.2
2,805,693	+				-1.1
2,805,693	+				-0.8
2,805,693	+				-1.2
2,805,697	+				+0.2
2,805,698	-				-0.4
2,805,698	-				-0.5
2,805,698	-				-0.0
2,805,711	+				-0.0
2,806,131	+				+0.6
2,806,232	+				-0.9
2,806,233	-				-0.4
2,806,233	-				-0.8
2,806,233	-				-1.0
2,806,409	+		BPHYT_RS12285	0.20	+0.1
2,806,583	+		BPHYT_RS12285	0.33	-0.2
2,806,584	-		BPHYT_RS12285	0.33	+0.6
2,806,593	-		BPHYT_RS12285	0.34	-0.5
2,806,593	-		BPHYT_RS12285	0.34	+1.6