Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11110
Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO7 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,523,540 | + | BPHYT_RS11105 | 0.40 | -0.9 | |
2,523,544 | + | BPHYT_RS11105 | 0.41 | +0.2 | |
2,524,647 | + | BPHYT_RS11110 | 0.10 | +1.0 | |
2,524,907 | - | BPHYT_RS11110 | 0.24 | -1.0 | |
2,525,252 | - | BPHYT_RS11110 | 0.41 | +0.6 | |
2,525,252 | - | BPHYT_RS11110 | 0.41 | -0.4 | |
2,525,794 | - | BPHYT_RS11110 | 0.68 | -0.1 | |
2,525,878 | - | BPHYT_RS11110 | 0.73 | -0.7 | |
2,526,177 | + | BPHYT_RS11110 | 0.88 | -1.2 | |
2,526,321 | + | -1.1 | |||
2,526,429 | - | +1.1 | |||
2,527,015 | - | -0.5 | |||
2,527,020 | + | +2.0 |
Or see this region's nucleotide sequence