Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11090

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11085 and BPHYT_RS11090 are separated by 10 nucleotidesBPHYT_RS11090 and BPHYT_RS11095 are separated by 35 nucleotidesBPHYT_RS11095 and BPHYT_RS11100 overlap by 4 nucleotides BPHYT_RS11085: BPHYT_RS11085 - major facilitator transporter, at 2,519,848 to 2,521,245 _RS11085 BPHYT_RS11090: BPHYT_RS11090 - membrane protein, at 2,521,256 to 2,521,747 _RS11090 BPHYT_RS11095: BPHYT_RS11095 - glycosyl transferase, at 2,521,783 to 2,522,439 _RS11095 BPHYT_RS11100: BPHYT_RS11100 - methyltransferase, at 2,522,436 to 2,523,041 _RS11100 Position (kb) 2521 2522Strain fitness (log2 ratio) -2 -1 0 1at 2520.256 kb on + strand, within BPHYT_RS11085at 2520.257 kb on - strand, within BPHYT_RS11085at 2520.257 kb on - strand, within BPHYT_RS11085at 2520.257 kb on - strand, within BPHYT_RS11085at 2520.257 kb on - strand, within BPHYT_RS11085at 2520.379 kb on + strand, within BPHYT_RS11085at 2520.379 kb on + strand, within BPHYT_RS11085at 2520.379 kb on + strand, within BPHYT_RS11085at 2520.379 kb on + strand, within BPHYT_RS11085at 2520.380 kb on - strand, within BPHYT_RS11085at 2520.568 kb on + strand, within BPHYT_RS11085at 2520.569 kb on - strand, within BPHYT_RS11085at 2521.727 kb on + strandat 2521.970 kb on + strand, within BPHYT_RS11095at 2522.033 kb on + strand, within BPHYT_RS11095at 2522.439 kb on + strandat 2522.439 kb on + strandat 2522.687 kb on - strand, within BPHYT_RS11100

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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2,520,256 + BPHYT_RS11085 0.29 +0.4
2,520,257 - BPHYT_RS11085 0.29 +0.2
2,520,257 - BPHYT_RS11085 0.29 -0.1
2,520,257 - BPHYT_RS11085 0.29 +0.0
2,520,257 - BPHYT_RS11085 0.29 +1.4
2,520,379 + BPHYT_RS11085 0.38 +0.5
2,520,379 + BPHYT_RS11085 0.38 -1.0
2,520,379 + BPHYT_RS11085 0.38 -0.2
2,520,379 + BPHYT_RS11085 0.38 -0.7
2,520,380 - BPHYT_RS11085 0.38 +0.4
2,520,568 + BPHYT_RS11085 0.52 +0.0
2,520,569 - BPHYT_RS11085 0.52 +0.6
2,521,727 + -0.3
2,521,970 + BPHYT_RS11095 0.28 -0.2
2,522,033 + BPHYT_RS11095 0.38 -0.8
2,522,439 + -2.4
2,522,439 + -0.3
2,522,687 - BPHYT_RS11100 0.41 -1.3

Or see this region's nucleotide sequence