Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08420

Experiment: 36hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08410 and BPHYT_RS08415 are separated by 30 nucleotidesBPHYT_RS08415 and BPHYT_RS08420 are separated by 136 nucleotidesBPHYT_RS08420 and BPHYT_RS08425 are separated by 129 nucleotides BPHYT_RS08410: BPHYT_RS08410 - dehydrogenase, at 1,927,708 to 1,928,649 _RS08410 BPHYT_RS08415: BPHYT_RS08415 - hypothetical protein, at 1,928,680 to 1,929,063 _RS08415 BPHYT_RS08420: BPHYT_RS08420 - histidine kinase, at 1,929,200 to 1,929,637 _RS08420 BPHYT_RS08425: BPHYT_RS08425 - hypothetical protein, at 1,929,767 to 1,930,639 _RS08425 Position (kb) 1929 1930Strain fitness (log2 ratio) -2 -1 0 1at 1928.593 kb on + strandat 1928.628 kb on + strandat 1928.898 kb on + strand, within BPHYT_RS08415at 1928.929 kb on + strand, within BPHYT_RS08415at 1928.948 kb on - strand, within BPHYT_RS08415at 1929.294 kb on - strand, within BPHYT_RS08420at 1929.889 kb on + strand, within BPHYT_RS08425at 1929.928 kb on - strand, within BPHYT_RS08425at 1930.020 kb on + strand, within BPHYT_RS08425at 1930.020 kb on + strand, within BPHYT_RS08425at 1930.021 kb on - strandat 1930.501 kb on + strand, within BPHYT_RS08425at 1930.501 kb on + strand, within BPHYT_RS08425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
remove
1,928,593 + +0.6
1,928,628 + -0.6
1,928,898 + BPHYT_RS08415 0.57 -0.2
1,928,929 + BPHYT_RS08415 0.65 -1.1
1,928,948 - BPHYT_RS08415 0.70 -1.5
1,929,294 - BPHYT_RS08420 0.21 -1.2
1,929,889 + BPHYT_RS08425 0.14 -1.0
1,929,928 - BPHYT_RS08425 0.18 +0.3
1,930,020 + BPHYT_RS08425 0.29 -2.1
1,930,020 + BPHYT_RS08425 0.29 -0.5
1,930,021 - -0.2
1,930,501 + BPHYT_RS08425 0.84 +0.1
1,930,501 + BPHYT_RS08425 0.84 -1.5

Or see this region's nucleotide sequence