Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04835

Experiment: 36hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO7 MOI 1
1,113,480	+				+0.5
1,113,992	+		BPHYT_RS04830	0.58	-0.5
1,113,993	-		BPHYT_RS04830	0.58	-1.0
1,113,993	-		BPHYT_RS04830	0.58	-1.1
1,113,993	-		BPHYT_RS04830	0.58	-2.2
1,114,318	+				-0.5
1,114,318	+				-1.5
1,114,318	+				+1.3
1,114,319	-				+0.2
1,114,389	+				-0.4
1,114,390	-				+4.2
1,114,587	+		BPHYT_RS04835	0.24	+0.1
1,114,678	+		BPHYT_RS04835	0.44	-0.2
1,114,678	+		BPHYT_RS04835	0.44	+1.2
1,114,678	+		BPHYT_RS04835	0.44	+0.9
1,114,679	-		BPHYT_RS04835	0.44	-1.4
1,114,777	+		BPHYT_RS04835	0.66	+1.4
1,114,835	-		BPHYT_RS04835	0.78	-0.5
1,114,835	-		BPHYT_RS04835	0.78	+0.2
1,114,838	+		BPHYT_RS04835	0.79	+0.4
1,114,838	+		BPHYT_RS04835	0.79	+1.5
1,114,838	+		BPHYT_RS04835	0.79	-2.5
1,114,838	+		BPHYT_RS04835	0.79	-1.0
1,114,838	+		BPHYT_RS04835	0.79	+0.4
1,114,839	-		BPHYT_RS04835	0.79	-0.1
1,114,839	-		BPHYT_RS04835	0.79	-0.2
1,114,839	-		BPHYT_RS04835	0.79	-0.0
1,114,951	+				-0.2
1,115,039	-				-0.4
1,115,039	-				-0.4
1,115,042	+				-0.5
1,115,121	-				-0.2
1,115,195	-				-0.6
1,115,195	-				-0.4
1,115,195	-				+0.7
1,115,195	-				+0.7
1,115,195	-				-0.1
1,115,195	-				+0.1
1,115,196	+				+1.0
1,115,197	-				+0.3
1,115,197	-				-0.0
1,115,240	-				-1.1
1,115,358	-				+0.7
1,115,403	-		BPHYT_RS04840	0.11	+1.6