Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04530 and BPHYT_RS04535 are separated by 54 nucleotides BPHYT_RS04535 and BPHYT_RS04540 are separated by 166 nucleotides
BPHYT_RS04530: BPHYT_RS04530 - acyltransferase, at 1,045,319 to 1,046,404
_RS04530
BPHYT_RS04535: BPHYT_RS04535 - hypothetical protein, at 1,046,459 to 1,048,156
_RS04535
BPHYT_RS04540: BPHYT_RS04540 - type VI secretion protein VasK, at 1,048,323 to 1,052,312
_RS04540
Position (kb) 1046
1047
1048
1049 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.693 kb on - strand, within BPHYT_RS04530 at 1045.770 kb on + strand, within BPHYT_RS04530 at 1046.127 kb on - strand, within BPHYT_RS04530 at 1046.142 kb on + strand, within BPHYT_RS04530 at 1046.463 kb on - strand at 1046.730 kb on + strand, within BPHYT_RS04535 at 1046.889 kb on + strand, within BPHYT_RS04535 at 1046.892 kb on + strand, within BPHYT_RS04535 at 1046.955 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.132 kb on - strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.262 kb on + strand, within BPHYT_RS04535 at 1047.266 kb on - strand, within BPHYT_RS04535 at 1047.288 kb on + strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535 at 1047.486 kb on + strand, within BPHYT_RS04535 at 1047.618 kb on + strand, within BPHYT_RS04535 at 1047.619 kb on - strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.623 kb on - strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.891 kb on - strand, within BPHYT_RS04535 at 1048.194 kb on - strand at 1048.194 kb on - strand at 1048.233 kb on - strand at 1048.267 kb on + strand at 1048.699 kb on + strand at 1048.895 kb on - strand, within BPHYT_RS04540 at 1049.032 kb on + strand, within BPHYT_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 1,045,575 + BPHYT_RS04530 0.24 +2.0 1,045,575 + BPHYT_RS04530 0.24 -0.1 1,045,575 + BPHYT_RS04530 0.24 -0.8 1,045,576 - BPHYT_RS04530 0.24 +0.6 1,045,576 - BPHYT_RS04530 0.24 -1.4 1,045,576 - BPHYT_RS04530 0.24 -0.8 1,045,605 - BPHYT_RS04530 0.26 -0.7 1,045,605 - BPHYT_RS04530 0.26 -1.6 1,045,693 - BPHYT_RS04530 0.34 +0.1 1,045,770 + BPHYT_RS04530 0.42 +1.1 1,046,127 - BPHYT_RS04530 0.74 +0.3 1,046,142 + BPHYT_RS04530 0.76 -0.2 1,046,463 - -1.6 1,046,730 + BPHYT_RS04535 0.16 +2.6 1,046,889 + BPHYT_RS04535 0.25 +0.0 1,046,892 + BPHYT_RS04535 0.26 +0.0 1,046,955 + BPHYT_RS04535 0.29 -1.3 1,047,067 + BPHYT_RS04535 0.36 +0.1 1,047,067 + BPHYT_RS04535 0.36 +0.6 1,047,067 + BPHYT_RS04535 0.36 -0.0 1,047,132 - BPHYT_RS04535 0.40 +0.1 1,047,153 + BPHYT_RS04535 0.41 -0.4 1,047,153 + BPHYT_RS04535 0.41 +1.3 1,047,153 + BPHYT_RS04535 0.41 -0.2 1,047,153 + BPHYT_RS04535 0.41 -0.1 1,047,262 + BPHYT_RS04535 0.47 +4.4 1,047,266 - BPHYT_RS04535 0.48 -0.0 1,047,288 + BPHYT_RS04535 0.49 +0.2 1,047,289 - BPHYT_RS04535 0.49 +0.6 1,047,289 - BPHYT_RS04535 0.49 -1.5 1,047,486 + BPHYT_RS04535 0.60 -1.2 1,047,618 + BPHYT_RS04535 0.68 +0.6 1,047,619 - BPHYT_RS04535 0.68 +0.0 1,047,622 + BPHYT_RS04535 0.68 +0.2 1,047,622 + BPHYT_RS04535 0.68 -0.6 1,047,623 - BPHYT_RS04535 0.69 -2.4 1,047,727 + BPHYT_RS04535 0.75 -0.1 1,047,727 + BPHYT_RS04535 0.75 +1.9 1,047,727 + BPHYT_RS04535 0.75 +0.5 1,047,891 - BPHYT_RS04535 0.84 -0.7 1,048,194 - +0.0 1,048,194 - +0.2 1,048,233 - -0.6 1,048,267 + -0.5 1,048,699 + +0.5 1,048,895 - BPHYT_RS04540 0.14 +1.0 1,049,032 + BPHYT_RS04540 0.18 +0.1
Or see this region's nucleotide sequence