Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02335 and BPHYT_RS02340 are separated by 253 nucleotides BPHYT_RS02340 and BPHYT_RS02345 are separated by 49 nucleotides
BPHYT_RS02335: BPHYT_RS02335 - fumarylacetoacetate hydrolase, at 535,271 to 536,254
_RS02335
BPHYT_RS02340: BPHYT_RS02340 - branched-chain amino acid ABC transporter substrate-binding protein, at 536,508 to 537,743
_RS02340
BPHYT_RS02345: BPHYT_RS02345 - enoyl-CoA hydratase, at 537,793 to 538,680
_RS02345
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.554 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 536.094 kb on - strand, within BPHYT_RS02335 at 536.173 kb on + strand at 536.174 kb on - strand at 536.297 kb on + strand at 536.361 kb on - strand at 536.475 kb on - strand at 536.635 kb on + strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.677 kb on + strand, within BPHYT_RS02340 at 536.678 kb on - strand, within BPHYT_RS02340 at 536.773 kb on - strand, within BPHYT_RS02340 at 536.801 kb on + strand, within BPHYT_RS02340 at 536.802 kb on - strand, within BPHYT_RS02340 at 536.903 kb on - strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.294 kb on + strand, within BPHYT_RS02340 at 537.295 kb on - strand, within BPHYT_RS02340 at 537.309 kb on + strand, within BPHYT_RS02340 at 537.310 kb on - strand, within BPHYT_RS02340 at 537.450 kb on + strand, within BPHYT_RS02340 at 537.507 kb on + strand, within BPHYT_RS02340 at 537.508 kb on - strand, within BPHYT_RS02340 at 537.730 kb on - strand at 537.776 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.778 kb on + strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.779 kb on - strand at 537.827 kb on - strand at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.324 kb on + strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.325 kb on - strand, within BPHYT_RS02345 at 538.327 kb on + strand, within BPHYT_RS02345 at 538.327 kb on + strand at 538.328 kb on - strand, within BPHYT_RS02345 at 538.698 kb on + strand at 538.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1 remove 535,532 + BPHYT_RS02335 0.27 -0.5 535,532 + BPHYT_RS02335 0.27 +0.3 535,532 + BPHYT_RS02335 0.27 -1.2 535,554 + BPHYT_RS02335 0.29 -0.8 535,653 + BPHYT_RS02335 0.39 +0.4 535,653 + BPHYT_RS02335 0.39 +0.6 535,653 + BPHYT_RS02335 0.39 -1.1 535,653 + BPHYT_RS02335 0.39 -1.0 535,654 - BPHYT_RS02335 0.39 +0.9 535,654 - BPHYT_RS02335 0.39 -0.6 535,654 - BPHYT_RS02335 0.39 -0.6 536,094 - BPHYT_RS02335 0.84 +0.1 536,173 + -0.6 536,174 - +0.4 536,297 + -0.2 536,361 - +0.6 536,475 - -0.6 536,635 + BPHYT_RS02340 0.10 -1.1 536,636 - BPHYT_RS02340 0.10 -1.0 536,636 - BPHYT_RS02340 0.10 +0.4 536,677 + BPHYT_RS02340 0.14 -0.9 536,678 - BPHYT_RS02340 0.14 -0.0 536,773 - BPHYT_RS02340 0.21 +0.1 536,801 + BPHYT_RS02340 0.24 +0.1 536,802 - BPHYT_RS02340 0.24 -1.4 536,903 - BPHYT_RS02340 0.32 +0.9 537,105 + BPHYT_RS02340 0.48 +0.1 537,105 + BPHYT_RS02340 0.48 +0.5 537,203 + BPHYT_RS02340 0.56 -1.9 537,203 + BPHYT_RS02340 0.56 -0.0 537,294 + BPHYT_RS02340 0.64 +1.4 537,295 - BPHYT_RS02340 0.64 +1.8 537,309 + BPHYT_RS02340 0.65 +0.0 537,310 - BPHYT_RS02340 0.65 +0.3 537,450 + BPHYT_RS02340 0.76 +0.6 537,507 + BPHYT_RS02340 0.81 -0.8 537,508 - BPHYT_RS02340 0.81 +1.1 537,730 - -0.1 537,776 + -1.5 537,778 + -1.6 537,778 + -0.5 537,778 + +0.1 537,778 + -0.4 537,778 + +0.9 537,779 - +1.0 537,779 - +0.4 537,779 - -0.2 537,779 - -0.3 537,827 - -0.8 538,324 + BPHYT_RS02345 0.60 +0.5 538,324 + BPHYT_RS02345 0.60 +2.1 538,324 + BPHYT_RS02345 0.60 -0.5 538,324 + BPHYT_RS02345 0.60 +0.2 538,325 - BPHYT_RS02345 0.60 -0.4 538,325 - BPHYT_RS02345 0.60 -0.2 538,325 - BPHYT_RS02345 0.60 +0.2 538,327 + BPHYT_RS02345 0.60 -0.2 538,327 + +2.4 538,328 - BPHYT_RS02345 0.60 -0.6 538,698 + -0.7 538,699 - -0.2
Or see this region's nucleotide sequence