Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02060

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02055 and BPHYT_RS02060 are separated by 195 nucleotidesBPHYT_RS02060 and BPHYT_RS02065 are separated by 291 nucleotides BPHYT_RS02055: BPHYT_RS02055 - LacI family transcription regulator, at 469,324 to 470,310 _RS02055 BPHYT_RS02060: BPHYT_RS02060 - diguanylate cyclase, at 470,506 to 472,356 _RS02060 BPHYT_RS02065: BPHYT_RS02065 - membrane protein, at 472,648 to 473,676 _RS02065 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 469.534 kb on + strand, within BPHYT_RS02055at 470.652 kb on - strandat 470.652 kb on - strandat 470.780 kb on + strand, within BPHYT_RS02060at 470.963 kb on + strand, within BPHYT_RS02060at 470.970 kb on - strand, within BPHYT_RS02060at 471.009 kb on - strand, within BPHYT_RS02060at 471.017 kb on + strand, within BPHYT_RS02060at 471.209 kb on + strand, within BPHYT_RS02060at 471.333 kb on - strand, within BPHYT_RS02060at 472.236 kb on - strandat 472.424 kb on - strandat 472.519 kb on - strandat 472.563 kb on + strandat 472.564 kb on - strandat 472.617 kb on + strandat 472.922 kb on - strand, within BPHYT_RS02065at 473.039 kb on + strand, within BPHYT_RS02065at 473.178 kb on + strand, within BPHYT_RS02065at 473.284 kb on + strand, within BPHYT_RS02065at 473.285 kb on - strand, within BPHYT_RS02065at 473.344 kb on - strand, within BPHYT_RS02065

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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469,534 + BPHYT_RS02055 0.21 -1.4
470,652 - -0.8
470,652 - -0.4
470,780 + BPHYT_RS02060 0.15 -0.7
470,963 + BPHYT_RS02060 0.25 +0.2
470,970 - BPHYT_RS02060 0.25 -0.6
471,009 - BPHYT_RS02060 0.27 -0.0
471,017 + BPHYT_RS02060 0.28 -2.5
471,209 + BPHYT_RS02060 0.38 -1.0
471,333 - BPHYT_RS02060 0.45 -3.0
472,236 - -0.2
472,424 - +0.6
472,519 - +1.1
472,563 + -0.2
472,564 - +0.4
472,617 + +1.8
472,922 - BPHYT_RS02065 0.27 +0.8
473,039 + BPHYT_RS02065 0.38 -0.8
473,178 + BPHYT_RS02065 0.52 +1.6
473,284 + BPHYT_RS02065 0.62 +0.4
473,285 - BPHYT_RS02065 0.62 -1.1
473,344 - BPHYT_RS02065 0.68 -1.8

Or see this region's nucleotide sequence