Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00835

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00830 and BPHYT_RS00835 are separated by 10 nucleotidesBPHYT_RS00835 and BPHYT_RS00840 are separated by 1 nucleotides BPHYT_RS00830: BPHYT_RS00830 - DNA primase, at 188,413 to 190,002 _RS00830 BPHYT_RS00835: BPHYT_RS00835 - plasmid stabilization protein, at 190,013 to 190,534 _RS00835 BPHYT_RS00840: BPHYT_RS00840 - DNA polymerase, at 190,536 to 191,585 _RS00840 Position (kb) 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 189.093 kb on - strand, within BPHYT_RS00830at 189.308 kb on - strand, within BPHYT_RS00830at 189.376 kb on + strand, within BPHYT_RS00830at 189.377 kb on - strand, within BPHYT_RS00830at 189.377 kb on - strand, within BPHYT_RS00830at 189.377 kb on - strand, within BPHYT_RS00830at 189.385 kb on + strand, within BPHYT_RS00830at 189.572 kb on - strand, within BPHYT_RS00830at 190.038 kb on + strandat 190.038 kb on + strandat 190.039 kb on - strandat 190.376 kb on + strand, within BPHYT_RS00835at 190.748 kb on + strand, within BPHYT_RS00840at 190.748 kb on + strand, within BPHYT_RS00840at 190.749 kb on - strand, within BPHYT_RS00840at 190.749 kb on - strand, within BPHYT_RS00840at 190.777 kb on - strand, within BPHYT_RS00840at 190.777 kb on - strand, within BPHYT_RS00840at 190.828 kb on + strand, within BPHYT_RS00840at 190.829 kb on - strand, within BPHYT_RS00840at 190.924 kb on + strand, within BPHYT_RS00840at 190.924 kb on + strand, within BPHYT_RS00840at 190.924 kb on + strand, within BPHYT_RS00840at 190.924 kb on + strand, within BPHYT_RS00840at 190.924 kb on + strand, within BPHYT_RS00840at 190.925 kb on - strand, within BPHYT_RS00840at 190.925 kb on - strand, within BPHYT_RS00840at 190.925 kb on - strand, within BPHYT_RS00840at 191.016 kb on + strand, within BPHYT_RS00840at 191.017 kb on - strand, within BPHYT_RS00840at 191.018 kb on + strand, within BPHYT_RS00840at 191.018 kb on + strand, within BPHYT_RS00840at 191.018 kb on + strand, within BPHYT_RS00840at 191.074 kb on + strand, within BPHYT_RS00840at 191.233 kb on + strand, within BPHYT_RS00840at 191.234 kb on - strand, within BPHYT_RS00840at 191.234 kb on - strand, within BPHYT_RS00840at 191.234 kb on - strand, within BPHYT_RS00840at 191.237 kb on + strand, within BPHYT_RS00840at 191.237 kb on + strandat 191.237 kb on + strand, within BPHYT_RS00840at 191.238 kb on - strand, within BPHYT_RS00840

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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189,093 - BPHYT_RS00830 0.43 +0.6
189,308 - BPHYT_RS00830 0.56 -0.8
189,376 + BPHYT_RS00830 0.61 +0.0
189,377 - BPHYT_RS00830 0.61 +1.2
189,377 - BPHYT_RS00830 0.61 +0.3
189,377 - BPHYT_RS00830 0.61 -0.5
189,385 + BPHYT_RS00830 0.61 -1.0
189,572 - BPHYT_RS00830 0.73 +2.2
190,038 + -0.5
190,038 + -1.0
190,039 - +0.6
190,376 + BPHYT_RS00835 0.70 -1.6
190,748 + BPHYT_RS00840 0.20 +1.2
190,748 + BPHYT_RS00840 0.20 +0.2
190,749 - BPHYT_RS00840 0.20 -0.7
190,749 - BPHYT_RS00840 0.20 +0.5
190,777 - BPHYT_RS00840 0.23 +0.7
190,777 - BPHYT_RS00840 0.23 +0.1
190,828 + BPHYT_RS00840 0.28 -0.2
190,829 - BPHYT_RS00840 0.28 -0.7
190,924 + BPHYT_RS00840 0.37 +0.4
190,924 + BPHYT_RS00840 0.37 -0.1
190,924 + BPHYT_RS00840 0.37 +0.9
190,924 + BPHYT_RS00840 0.37 -0.3
190,924 + BPHYT_RS00840 0.37 +0.5
190,925 - BPHYT_RS00840 0.37 +0.3
190,925 - BPHYT_RS00840 0.37 +2.6
190,925 - BPHYT_RS00840 0.37 +1.6
191,016 + BPHYT_RS00840 0.46 +0.3
191,017 - BPHYT_RS00840 0.46 -0.1
191,018 + BPHYT_RS00840 0.46 -0.3
191,018 + BPHYT_RS00840 0.46 -0.8
191,018 + BPHYT_RS00840 0.46 -2.3
191,074 + BPHYT_RS00840 0.51 +1.2
191,233 + BPHYT_RS00840 0.66 -1.0
191,234 - BPHYT_RS00840 0.66 -1.2
191,234 - BPHYT_RS00840 0.66 +0.2
191,234 - BPHYT_RS00840 0.66 +0.5
191,237 + BPHYT_RS00840 0.67 -0.3
191,237 + +0.6
191,237 + BPHYT_RS00840 0.67 -1.4
191,238 - BPHYT_RS00840 0.67 +1.3

Or see this region's nucleotide sequence