Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00475

Experiment: 36hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS00470 and BPHYT_RS00475 are separated by 98 nucleotidesBPHYT_RS00475 and BPHYT_RS00480 are separated by 523 nucleotides BPHYT_RS00470: BPHYT_RS00470 - integrase, at 112,705 to 114,141 _RS00470 BPHYT_RS00475: BPHYT_RS00475 - hypothetical protein, at 114,240 to 114,818 _RS00475 BPHYT_RS00480: BPHYT_RS00480 - excinuclease ABC subunit A, at 115,342 to 117,990 _RS00480 Position (kb) 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.150 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.294 kb on + strandat 115.524 kb on + strandat 115.613 kb on + strand, within BPHYT_RS00480at 115.613 kb on + strand, within BPHYT_RS00480at 115.716 kb on - strand, within BPHYT_RS00480at 115.745 kb on - strand, within BPHYT_RS00480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
remove
115,150 + -0.4
115,294 + -0.7
115,294 + -0.1
115,294 + -2.0
115,294 + -0.4
115,524 + -1.0
115,613 + BPHYT_RS00480 0.10 +0.2
115,613 + BPHYT_RS00480 0.10 -0.5
115,716 - BPHYT_RS00480 0.14 +1.1
115,745 - BPHYT_RS00480 0.15 -3.1

Or see this region's nucleotide sequence