Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26810

Experiment: 24hr PHYTO11 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS26800 and BPHYT_RS26805 are separated by 44 nucleotidesBPHYT_RS26805 and BPHYT_RS26810 are separated by 148 nucleotidesBPHYT_RS26810 and BPHYT_RS26815 are separated by 164 nucleotides BPHYT_RS26800: BPHYT_RS26800 - methionine sulfoxide reductase A, at 1,586,152 to 1,586,877 _RS26800 BPHYT_RS26805: BPHYT_RS26805 - methionine sulfoxide reductase B, at 1,586,922 to 1,587,446 _RS26805 BPHYT_RS26810: BPHYT_RS26810 - AsnC family transcriptional regulator, at 1,587,595 to 1,588,122 _RS26810 BPHYT_RS26815: BPHYT_RS26815 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,588,287 to 1,589,303 _RS26815 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -1 0 1at 1586.651 kb on - strand, within BPHYT_RS26800at 1586.899 kb on - strandat 1587.597 kb on - strandat 1588.455 kb on + strand, within BPHYT_RS26815at 1588.753 kb on - strand, within BPHYT_RS26815at 1588.860 kb on + strand, within BPHYT_RS26815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1
remove
1,586,651 - BPHYT_RS26800 0.69 -0.5
1,586,899 - +0.1
1,587,597 - -0.7
1,588,455 + BPHYT_RS26815 0.17 -0.2
1,588,753 - BPHYT_RS26815 0.46 -0.3
1,588,860 + BPHYT_RS26815 0.56 -0.9

Or see this region's nucleotide sequence