Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25250

Experiment: 24hr PHYTO11 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25245 and BPHYT_RS25250 are separated by 269 nucleotidesBPHYT_RS25250 and BPHYT_RS25255 are separated by 57 nucleotides BPHYT_RS25245: BPHYT_RS25245 - glycine/betaine ABC transporter substrate-binding protein, at 1,238,159 to 1,239,109 _RS25245 BPHYT_RS25250: BPHYT_RS25250 - porin, at 1,239,379 to 1,240,527 _RS25250 BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505 _RS25255 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -1 0 1at 1239.176 kb on - strandat 1239.236 kb on - strandat 1239.256 kb on - strandat 1239.694 kb on + strand, within BPHYT_RS25250at 1240.031 kb on - strand, within BPHYT_RS25250at 1240.127 kb on - strand, within BPHYT_RS25250

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1
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1,239,176 - +0.2
1,239,236 - +1.4
1,239,256 - -0.4
1,239,694 + BPHYT_RS25250 0.27 +0.0
1,240,031 - BPHYT_RS25250 0.57 -0.6
1,240,127 - BPHYT_RS25250 0.65 -1.2

Or see this region's nucleotide sequence