Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23455

Experiment: 24hr PHYTO11 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23450 and BPHYT_RS23455 are separated by 131 nucleotidesBPHYT_RS23455 and BPHYT_RS23460 are separated by 46 nucleotides BPHYT_RS23450: BPHYT_RS23450 - GntR family transcriptional regulator, at 829,353 to 830,066 _RS23450 BPHYT_RS23455: BPHYT_RS23455 - phosphorylase, at 830,198 to 831,106 _RS23455 BPHYT_RS23460: BPHYT_RS23460 - AraC family transcriptional regulator, at 831,153 to 832,109 _RS23460 Position (kb) 830 831 832Strain fitness (log2 ratio) -1 0 1at 830.195 kb on + strandat 830.785 kb on + strand, within BPHYT_RS23455at 831.282 kb on - strand, within BPHYT_RS23460

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1
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830,195 + -1.0
830,785 + BPHYT_RS23455 0.65 -0.3
831,282 - BPHYT_RS23460 0.13 +0.4

Or see this region's nucleotide sequence