Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15380

Experiment: 24hr PHYTO11 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15375 and BPHYT_RS15380 are separated by 71 nucleotidesBPHYT_RS15380 and BPHYT_RS15385 are separated by 15 nucleotidesBPHYT_RS15385 and BPHYT_RS15390 are separated by 201 nucleotides BPHYT_RS15375: BPHYT_RS15375 - glutamate-1-semialdehyde 2,1-aminomutase, at 3,490,398 to 3,491,681 _RS15375 BPHYT_RS15380: BPHYT_RS15380 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,491,753 to 3,492,904 _RS15380 BPHYT_RS15385: BPHYT_RS15385 - riboflavin synthase subunit alpha, at 3,492,920 to 3,493,534 _RS15385 BPHYT_RS15390: BPHYT_RS15390 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase, at 3,493,736 to 3,494,872 _RS15390 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3491.720 kb on + strandat 3491.727 kb on + strandat 3491.727 kb on + strandat 3492.850 kb on + strandat 3492.913 kb on + strandat 3493.532 kb on + strandat 3493.533 kb on - strandat 3493.533 kb on - strandat 3493.552 kb on + strandat 3493.552 kb on + strandat 3493.558 kb on + strandat 3493.558 kb on + strandat 3493.558 kb on + strandat 3493.559 kb on - strandat 3493.559 kb on - strandat 3493.559 kb on - strandat 3493.621 kb on + strandat 3493.622 kb on - strandat 3493.662 kb on + strandat 3493.703 kb on - strandat 3493.707 kb on + strandat 3493.755 kb on + strandat 3493.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1
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3,491,720 + -1.0
3,491,727 + -0.7
3,491,727 + +0.1
3,492,850 + -0.6
3,492,913 + +1.2
3,493,532 + +0.3
3,493,533 - -1.7
3,493,533 - -1.1
3,493,552 + -0.9
3,493,552 + -1.0
3,493,558 + -0.7
3,493,558 + -0.4
3,493,558 + +0.1
3,493,559 - -0.2
3,493,559 - -1.1
3,493,559 - -0.3
3,493,621 + +0.6
3,493,622 - -0.5
3,493,662 + -0.2
3,493,703 - -0.1
3,493,707 + -0.1
3,493,755 + -0.6
3,493,755 + +1.1

Or see this region's nucleotide sequence