Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10710

Experiment: 24hr PHYTO11 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS10705 and BPHYT_RS10710 are separated by 10 nucleotidesBPHYT_RS10710 and BPHYT_RS10715 are separated by 236 nucleotides BPHYT_RS10705: BPHYT_RS10705 - MFS transporter, at 2,435,929 to 2,437,245 _RS10705 BPHYT_RS10710: BPHYT_RS10710 - sensor histidine kinase, at 2,437,256 to 2,438,776 _RS10710 BPHYT_RS10715: BPHYT_RS10715 - acyl-CoA dehydrogenase, at 2,439,013 to 2,440,191 _RS10715 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -1 0 1at 2436.430 kb on + strand, within BPHYT_RS10705at 2436.877 kb on + strand, within BPHYT_RS10705at 2436.878 kb on - strand, within BPHYT_RS10705at 2436.879 kb on + strand, within BPHYT_RS10705at 2437.132 kb on + strandat 2437.132 kb on + strandat 2437.227 kb on + strandat 2437.645 kb on - strand, within BPHYT_RS10710at 2437.980 kb on + strand, within BPHYT_RS10710at 2438.807 kb on + strandat 2438.927 kb on + strandat 2439.333 kb on + strand, within BPHYT_RS10715at 2439.698 kb on - strand, within BPHYT_RS10715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1
remove
2,436,430 + BPHYT_RS10705 0.38 -0.6
2,436,877 + BPHYT_RS10705 0.72 -1.4
2,436,878 - BPHYT_RS10705 0.72 +1.3
2,436,879 + BPHYT_RS10705 0.72 +0.9
2,437,132 + -0.6
2,437,132 + -0.2
2,437,227 + +0.4
2,437,645 - BPHYT_RS10710 0.26 +0.5
2,437,980 + BPHYT_RS10710 0.48 +1.4
2,438,807 + +0.6
2,438,927 + +1.2
2,439,333 + BPHYT_RS10715 0.27 -0.2
2,439,698 - BPHYT_RS10715 0.58 -0.0

Or see this region's nucleotide sequence