Experiment: 24hr PHYTO11 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02740 and BPHYT_RS02745 are separated by 109 nucleotides BPHYT_RS02745 and BPHYT_RS02750 are separated by 255 nucleotides
BPHYT_RS02740: BPHYT_RS02740 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) <small>(from data)</small>, at 613,621 to 616,185
_RS02740
BPHYT_RS02745: BPHYT_RS02745 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) <small>(from data)</small>, at 616,295 to 618,070
_RS02745
BPHYT_RS02750: BPHYT_RS02750 - hypothetical protein, at 618,326 to 619,651
_RS02750
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 615.430 kb on + strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.431 kb on - strand, within BPHYT_RS02740 at 615.691 kb on - strand, within BPHYT_RS02740 at 616.201 kb on + strand at 616.228 kb on + strand at 616.228 kb on + strand at 616.228 kb on + strand at 616.232 kb on + strand at 616.232 kb on + strand at 616.643 kb on + strand, within BPHYT_RS02745 at 616.752 kb on + strand, within BPHYT_RS02745 at 616.753 kb on - strand, within BPHYT_RS02745 at 617.174 kb on + strand, within BPHYT_RS02745 at 617.174 kb on + strand, within BPHYT_RS02745 at 617.200 kb on + strand, within BPHYT_RS02745 at 617.270 kb on + strand, within BPHYT_RS02745 at 617.282 kb on + strand, within BPHYT_RS02745 at 617.283 kb on - strand, within BPHYT_RS02745 at 617.283 kb on - strand, within BPHYT_RS02745 at 617.330 kb on + strand, within BPHYT_RS02745 at 617.331 kb on - strand, within BPHYT_RS02745 at 617.332 kb on + strand, within BPHYT_RS02745 at 617.333 kb on - strand, within BPHYT_RS02745 at 617.345 kb on + strand, within BPHYT_RS02745 at 617.494 kb on + strand, within BPHYT_RS02745 at 617.896 kb on + strand at 617.981 kb on - strand at 618.069 kb on - strand at 618.421 kb on + strand at 618.421 kb on + strand at 618.509 kb on + strand, within BPHYT_RS02750 at 618.510 kb on - strand, within BPHYT_RS02750 at 618.514 kb on + strand, within BPHYT_RS02750 at 618.515 kb on - strand, within BPHYT_RS02750 at 618.515 kb on - strand, within BPHYT_RS02750 at 618.595 kb on - strand, within BPHYT_RS02750 at 618.638 kb on + strand at 618.638 kb on + strand, within BPHYT_RS02750 at 618.639 kb on - strand, within BPHYT_RS02750 at 618.641 kb on + strand, within BPHYT_RS02750 at 618.642 kb on - strand, within BPHYT_RS02750 at 618.642 kb on - strand, within BPHYT_RS02750 at 618.744 kb on - strand, within BPHYT_RS02750 at 618.766 kb on + strand, within BPHYT_RS02750 at 618.818 kb on + strand, within BPHYT_RS02750 at 618.885 kb on + strand, within BPHYT_RS02750 at 618.904 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 0.1 remove 615,430 + BPHYT_RS02740 0.71 +0.4 615,431 - BPHYT_RS02740 0.71 -1.1 615,431 - BPHYT_RS02740 0.71 +0.9 615,431 - BPHYT_RS02740 0.71 +0.6 615,691 - BPHYT_RS02740 0.81 +0.2 616,201 + +0.3 616,228 + +1.2 616,228 + +0.2 616,228 + -1.7 616,232 + +0.6 616,232 + -0.2 616,643 + BPHYT_RS02745 0.20 -0.1 616,752 + BPHYT_RS02745 0.26 -0.8 616,753 - BPHYT_RS02745 0.26 +0.0 617,174 + BPHYT_RS02745 0.49 +0.6 617,174 + BPHYT_RS02745 0.49 -0.5 617,200 + BPHYT_RS02745 0.51 +2.7 617,270 + BPHYT_RS02745 0.55 -1.2 617,282 + BPHYT_RS02745 0.56 -0.4 617,283 - BPHYT_RS02745 0.56 -2.0 617,283 - BPHYT_RS02745 0.56 -0.5 617,330 + BPHYT_RS02745 0.58 -1.8 617,331 - BPHYT_RS02745 0.58 -0.7 617,332 + BPHYT_RS02745 0.58 -0.4 617,333 - BPHYT_RS02745 0.58 -0.4 617,345 + BPHYT_RS02745 0.59 +0.2 617,494 + BPHYT_RS02745 0.68 -0.3 617,896 + -0.4 617,981 - -1.0 618,069 - -0.2 618,421 + +0.6 618,421 + +0.0 618,509 + BPHYT_RS02750 0.14 -0.3 618,510 - BPHYT_RS02750 0.14 -0.7 618,514 + BPHYT_RS02750 0.14 +0.0 618,515 - BPHYT_RS02750 0.14 -0.5 618,515 - BPHYT_RS02750 0.14 -1.7 618,595 - BPHYT_RS02750 0.20 -0.8 618,638 + +0.6 618,638 + BPHYT_RS02750 0.24 +0.6 618,639 - BPHYT_RS02750 0.24 +0.4 618,641 + BPHYT_RS02750 0.24 -0.6 618,642 - BPHYT_RS02750 0.24 -0.3 618,642 - BPHYT_RS02750 0.24 -1.5 618,744 - BPHYT_RS02750 0.32 -0.4 618,766 + BPHYT_RS02750 0.33 +0.6 618,818 + BPHYT_RS02750 0.37 -1.1 618,885 + BPHYT_RS02750 0.42 -0.3 618,904 + BPHYT_RS02750 0.44 -0.2 618,983 + BPHYT_RS02750 0.50 -0.3 618,983 + BPHYT_RS02750 0.50 -0.6
Or see this region's nucleotide sequence