Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34680
Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO11 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,387,053 | + | +2.2 | |||
3,387,495 | + | +0.2 | |||
3,387,708 | - | BPHYT_RS34680 | 0.18 | +0.3 | |
3,387,718 | - | BPHYT_RS34680 | 0.22 | +0.5 | |
3,387,975 | - | +0.2 | |||
3,388,119 | + | -0.5 | |||
3,388,150 | - | +1.9 | |||
3,388,216 | + | +0.2 | |||
3,388,216 | + | -0.7 | |||
3,388,373 | + | +0.2 | |||
3,388,374 | - | +0.2 | |||
3,388,752 | - | +0.4 | |||
3,388,786 | + | +0.3 | |||
3,388,787 | - | +2.4 |
Or see this region's nucleotide sequence