Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31515

Experiment: 24hr PHYTO11 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31510 and BPHYT_RS31515 are separated by 346 nucleotidesBPHYT_RS31515 and BPHYT_RS31520 are separated by 595 nucleotides BPHYT_RS31510: BPHYT_RS31510 - sulfonate ABC transporter substrate-binding protein, at 2,622,061 to 2,623,434 _RS31510 BPHYT_RS31515: BPHYT_RS31515 - agmatinase, at 2,623,781 to 2,624,755 _RS31515 BPHYT_RS31520: BPHYT_RS31520 - LysR family transcriptional regulator, at 2,625,351 to 2,626,265 _RS31520 Position (kb) 2623 2624 2625Strain fitness (log2 ratio) -2 -1 0 1at 2623.264 kb on + strand, within BPHYT_RS31510at 2623.409 kb on + strandat 2623.409 kb on + strandat 2623.522 kb on + strandat 2623.612 kb on - strandat 2624.089 kb on + strand, within BPHYT_RS31515at 2624.228 kb on - strand, within BPHYT_RS31515at 2624.256 kb on + strand, within BPHYT_RS31515at 2624.409 kb on - strand, within BPHYT_RS31515at 2624.935 kb on - strandat 2625.100 kb on + strandat 2625.100 kb on + strandat 2625.552 kb on - strand, within BPHYT_RS31520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
remove
2,623,264 + BPHYT_RS31510 0.88 +0.9
2,623,409 + -1.9
2,623,409 + -0.2
2,623,522 + +0.7
2,623,612 - -2.1
2,624,089 + BPHYT_RS31515 0.32 +1.3
2,624,228 - BPHYT_RS31515 0.46 +0.1
2,624,256 + BPHYT_RS31515 0.49 +0.1
2,624,409 - BPHYT_RS31515 0.64 +0.6
2,624,935 - +0.9
2,625,100 + +0.9
2,625,100 + -2.3
2,625,552 - BPHYT_RS31520 0.22 +1.2

Or see this region's nucleotide sequence