Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26175

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotidesBPHYT_RS26170 and BPHYT_RS26175 are separated by 80 nucleotidesBPHYT_RS26175 and BPHYT_RS26180 are separated by 20 nucleotidesBPHYT_RS26180 and BPHYT_RS26185 are separated by 11 nucleotidesBPHYT_RS26185 and BPHYT_RS26190 are separated by 11 nucleotides BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517 _RS26165 BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296 _RS26170 BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949 _RS26175 BPHYT_RS26180: BPHYT_RS26180 - acetyltransferase, at 1,446,970 to 1,447,506 _RS26180 BPHYT_RS26185: BPHYT_RS26185 - thioesterase, at 1,447,518 to 1,447,913 _RS26185 BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557 _RS26190 Position (kb) 1446 1447Strain fitness (log2 ratio) -1 0 1at 1445.566 kb on - strandat 1445.690 kb on - strandat 1445.892 kb on + strand, within BPHYT_RS26170at 1445.892 kb on + strand, within BPHYT_RS26170at 1446.000 kb on - strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.144 kb on - strand, within BPHYT_RS26170at 1446.181 kb on + strand, within BPHYT_RS26170at 1446.182 kb on - strand, within BPHYT_RS26170at 1446.761 kb on + strand, within BPHYT_RS26175at 1447.492 kb on + strandat 1447.493 kb on - strandat 1447.502 kb on + strandat 1447.503 kb on - strandat 1447.503 kb on - strandat 1447.672 kb on + strand, within BPHYT_RS26185

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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1,445,566 - +0.4
1,445,690 - -1.5
1,445,892 + BPHYT_RS26170 0.29 +0.2
1,445,892 + BPHYT_RS26170 0.29 -0.8
1,446,000 - BPHYT_RS26170 0.48 -1.1
1,446,141 + BPHYT_RS26170 0.73 -0.4
1,446,141 + BPHYT_RS26170 0.73 +1.2
1,446,141 + BPHYT_RS26170 0.73 -1.4
1,446,144 - BPHYT_RS26170 0.73 -0.8
1,446,181 + BPHYT_RS26170 0.80 -0.1
1,446,182 - BPHYT_RS26170 0.80 -1.0
1,446,761 + BPHYT_RS26175 0.67 -1.1
1,447,492 + -0.7
1,447,493 - -0.1
1,447,502 + +0.9
1,447,503 - +0.5
1,447,503 - -1.3
1,447,672 + BPHYT_RS26185 0.39 +0.4

Or see this region's nucleotide sequence