Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26150 and BPHYT_RS26155 are separated by 45 nucleotides BPHYT_RS26155 and BPHYT_RS26160 are separated by 38 nucleotides BPHYT_RS26160 and BPHYT_RS26165 are separated by 56 nucleotides BPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotides
BPHYT_RS26150: BPHYT_RS26150 - hypothetical protein, at 1,442,226 to 1,442,996
_RS26150
BPHYT_RS26155: BPHYT_RS26155 - carboxylesterase, at 1,443,042 to 1,443,911
_RS26155
BPHYT_RS26160: BPHYT_RS26160 - membrane protein, at 1,443,950 to 1,444,756
_RS26160
BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517
_RS26165
BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296
_RS26170
Position (kb)
1443
1444
1445 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1443.177 kb on - strand, within BPHYT_RS26155 at 1443.417 kb on + strand, within BPHYT_RS26155 at 1443.736 kb on - strand, within BPHYT_RS26155 at 1444.142 kb on + strand, within BPHYT_RS26160 at 1444.511 kb on + strand, within BPHYT_RS26160 at 1444.603 kb on + strand, within BPHYT_RS26160 at 1444.604 kb on - strand, within BPHYT_RS26160 at 1444.754 kb on + strand at 1445.566 kb on - strand at 1445.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 1,443,177 - BPHYT_RS26155 0.16 -0.7 1,443,417 + BPHYT_RS26155 0.43 -0.7 1,443,736 - BPHYT_RS26155 0.80 +2.8 1,444,142 + BPHYT_RS26160 0.24 -0.4 1,444,511 + BPHYT_RS26160 0.70 -0.1 1,444,603 + BPHYT_RS26160 0.81 -0.3 1,444,604 - BPHYT_RS26160 0.81 -0.6 1,444,754 + +0.4 1,445,566 - +0.4 1,445,690 - -1.5
Or see this region's nucleotide sequence