Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26160

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26150 and BPHYT_RS26155 are separated by 45 nucleotidesBPHYT_RS26155 and BPHYT_RS26160 are separated by 38 nucleotidesBPHYT_RS26160 and BPHYT_RS26165 are separated by 56 nucleotidesBPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotides BPHYT_RS26150: BPHYT_RS26150 - hypothetical protein, at 1,442,226 to 1,442,996 _RS26150 BPHYT_RS26155: BPHYT_RS26155 - carboxylesterase, at 1,443,042 to 1,443,911 _RS26155 BPHYT_RS26160: BPHYT_RS26160 - membrane protein, at 1,443,950 to 1,444,756 _RS26160 BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517 _RS26165 BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296 _RS26170 Position (kb) 1443 1444 1445Strain fitness (log2 ratio) -1 0 1 2 3at 1443.177 kb on - strand, within BPHYT_RS26155at 1443.417 kb on + strand, within BPHYT_RS26155at 1443.736 kb on - strand, within BPHYT_RS26155at 1444.142 kb on + strand, within BPHYT_RS26160at 1444.511 kb on + strand, within BPHYT_RS26160at 1444.603 kb on + strand, within BPHYT_RS26160at 1444.604 kb on - strand, within BPHYT_RS26160at 1444.754 kb on + strandat 1445.566 kb on - strandat 1445.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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1,443,177 - BPHYT_RS26155 0.16 -0.7
1,443,417 + BPHYT_RS26155 0.43 -0.7
1,443,736 - BPHYT_RS26155 0.80 +2.8
1,444,142 + BPHYT_RS26160 0.24 -0.4
1,444,511 + BPHYT_RS26160 0.70 -0.1
1,444,603 + BPHYT_RS26160 0.81 -0.3
1,444,604 - BPHYT_RS26160 0.81 -0.6
1,444,754 + +0.4
1,445,566 - +0.4
1,445,690 - -1.5

Or see this region's nucleotide sequence