Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26080

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26075 and BPHYT_RS26080 overlap by 4 nucleotidesBPHYT_RS26080 and BPHYT_RS26085 are separated by 46 nucleotides BPHYT_RS26075: BPHYT_RS26075 - ABC transporter permease, at 1,425,212 to 1,426,303 _RS26075 BPHYT_RS26080: BPHYT_RS26080 - ABC transporter ATPase, at 1,426,300 to 1,427,883 _RS26080 BPHYT_RS26085: BPHYT_RS26085 - ABC transporter substrate-binding protein, at 1,427,930 to 1,428,907 _RS26085 Position (kb) 1426 1427 1428Strain fitness (log2 ratio) -2 -1 0 1at 1425.612 kb on + strand, within BPHYT_RS26075at 1425.612 kb on + strand, within BPHYT_RS26075at 1425.612 kb on + strand, within BPHYT_RS26075at 1426.229 kb on + strandat 1426.397 kb on + strandat 1426.492 kb on - strand, within BPHYT_RS26080at 1428.064 kb on + strand, within BPHYT_RS26085at 1428.064 kb on + strand, within BPHYT_RS26085at 1428.067 kb on - strand, within BPHYT_RS26085at 1428.181 kb on - strand, within BPHYT_RS26085at 1428.334 kb on - strand, within BPHYT_RS26085at 1428.433 kb on - strand, within BPHYT_RS26085

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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1,425,612 + BPHYT_RS26075 0.37 +0.3
1,425,612 + BPHYT_RS26075 0.37 +1.0
1,425,612 + BPHYT_RS26075 0.37 -0.7
1,426,229 + -1.1
1,426,397 + -0.9
1,426,492 - BPHYT_RS26080 0.12 -1.5
1,428,064 + BPHYT_RS26085 0.14 -0.6
1,428,064 + BPHYT_RS26085 0.14 -1.0
1,428,067 - BPHYT_RS26085 0.14 -1.0
1,428,181 - BPHYT_RS26085 0.26 -2.4
1,428,334 - BPHYT_RS26085 0.41 -0.3
1,428,433 - BPHYT_RS26085 0.51 -0.3

Or see this region's nucleotide sequence