Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25610 and BPHYT_RS25615 are separated by 452 nucleotides BPHYT_RS25615 and BPHYT_RS25620 are separated by 3 nucleotides BPHYT_RS25620 and BPHYT_RS25625 are separated by 10 nucleotides
BPHYT_RS25610: BPHYT_RS25610 - HAD family hydrolase, at 1,318,862 to 1,319,548
_RS25610
BPHYT_RS25615: BPHYT_RS25615 - alkyl hydroperoxide reductase, at 1,320,001 to 1,320,654
_RS25615
BPHYT_RS25620: BPHYT_RS25620 - hypothetical protein, at 1,320,658 to 1,321,641
_RS25620
BPHYT_RS25625: BPHYT_RS25625 - glutathione S-transferase, at 1,321,652 to 1,322,356
_RS25625
Position (kb) 1320
1321 Strain fitness (log2 ratio) -1
0
1 at 1319.434 kb on - strand, within BPHYT_RS25610 at 1319.723 kb on - strand at 1320.541 kb on + strand, within BPHYT_RS25615 at 1320.564 kb on + strand, within BPHYT_RS25615 at 1320.565 kb on - strand, within BPHYT_RS25615 at 1320.763 kb on - strand, within BPHYT_RS25620 at 1320.935 kb on + strand, within BPHYT_RS25620 at 1321.218 kb on + strand, within BPHYT_RS25620 at 1321.222 kb on + strand, within BPHYT_RS25620 at 1321.223 kb on - strand, within BPHYT_RS25620 at 1321.379 kb on - strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 1,319,434 - BPHYT_RS25610 0.83 -0.4 1,319,723 - +0.6 1,320,541 + BPHYT_RS25615 0.83 -0.9 1,320,564 + BPHYT_RS25615 0.86 -0.4 1,320,565 - BPHYT_RS25615 0.86 -1.5 1,320,763 - BPHYT_RS25620 0.11 -1.1 1,320,935 + BPHYT_RS25620 0.28 -1.3 1,321,218 + BPHYT_RS25620 0.57 -0.9 1,321,222 + BPHYT_RS25620 0.57 -0.0 1,321,223 - BPHYT_RS25620 0.57 -0.7 1,321,379 - BPHYT_RS25620 0.73 +0.1 1,321,417 + BPHYT_RS25620 0.77 -0.1 1,321,417 + BPHYT_RS25620 0.77 -1.0 1,321,417 + BPHYT_RS25620 0.77 +0.8
Or see this region's nucleotide sequence