Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23290 and BPHYT_RS23295 are separated by 3 nucleotides BPHYT_RS23295 and BPHYT_RS23300 are separated by 52 nucleotides BPHYT_RS23300 and BPHYT_RS23305 are separated by 45 nucleotides BPHYT_RS23305 and BPHYT_RS23310 are separated by 145 nucleotides
BPHYT_RS23290: BPHYT_RS23290 - hypothetical protein, at 789,542 to 789,730
_RS23290
BPHYT_RS23295: BPHYT_RS23295 - O-methyltransferase, at 789,734 to 790,348
_RS23295
BPHYT_RS23300: BPHYT_RS23300 - IclR family transcriptional regulator, at 790,401 to 791,012
_RS23300
BPHYT_RS23305: BPHYT_RS23305 - hypothetical protein, at 791,058 to 791,600
_RS23305
BPHYT_RS23310: BPHYT_RS23310 - hypothetical protein, at 791,746 to 792,558
_RS23310
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.560 kb on + strand at 790.070 kb on + strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.163 kb on + strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.228 kb on + strand, within BPHYT_RS23295 at 790.229 kb on - strand, within BPHYT_RS23295 at 791.025 kb on + strand at 791.026 kb on - strand at 791.080 kb on + strand at 791.202 kb on - strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.496 kb on - strand, within BPHYT_RS23305 at 791.721 kb on + strand at 791.722 kb on - strand at 791.724 kb on - strand at 791.774 kb on + strand at 791.775 kb on - strand at 791.903 kb on - strand, within BPHYT_RS23310
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 789,560 + -1.0 790,070 + BPHYT_RS23295 0.55 +0.9 790,071 - BPHYT_RS23295 0.55 +0.6 790,071 - BPHYT_RS23295 0.55 -0.2 790,163 + BPHYT_RS23295 0.70 -0.5 790,164 - BPHYT_RS23295 0.70 -0.2 790,164 - BPHYT_RS23295 0.70 -0.3 790,228 + BPHYT_RS23295 0.80 +1.1 790,229 - BPHYT_RS23295 0.80 -0.2 791,025 + -0.6 791,026 - +1.0 791,080 + -1.2 791,202 - BPHYT_RS23305 0.27 -1.8 791,314 + BPHYT_RS23305 0.47 -0.6 791,314 + BPHYT_RS23305 0.47 -0.2 791,496 - BPHYT_RS23305 0.81 -0.7 791,721 + -0.3 791,722 - -1.0 791,724 - +0.8 791,774 + +2.0 791,775 - +0.3 791,903 - BPHYT_RS23310 0.19 +0.0
Or see this region's nucleotide sequence