Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22830

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22825 and BPHYT_RS22830 are separated by 677 nucleotidesBPHYT_RS22830 and BPHYT_RS22835 are separated by 72 nucleotidesBPHYT_RS22835 and BPHYT_RS22840 are separated by 49 nucleotides BPHYT_RS22825: BPHYT_RS22825 - hypothetical protein, at 681,088 to 681,438 _RS22825 BPHYT_RS22830: BPHYT_RS22830 - cAMP-binding protein, at 682,116 to 683,360 _RS22830 BPHYT_RS22835: BPHYT_RS22835 - flagellar motor protein MotA, at 683,433 to 684,197 _RS22835 BPHYT_RS22840: BPHYT_RS22840 - motility protein B, at 684,247 to 684,915 _RS22840 Position (kb) 682 683 684Strain fitness (log2 ratio) -1 0 1at 682.060 kb on - strandat 683.433 kb on - strandat 683.449 kb on + strandat 683.514 kb on - strand, within BPHYT_RS22835at 684.093 kb on + strand, within BPHYT_RS22835

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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682,060 - -1.7
683,433 - -0.6
683,449 + -0.3
683,514 - BPHYT_RS22835 0.11 +0.7
684,093 + BPHYT_RS22835 0.86 +1.5

Or see this region's nucleotide sequence