Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22655 and BPHYT_RS22660 are separated by 10 nucleotides BPHYT_RS22660 and BPHYT_RS22665 are separated by 121 nucleotides BPHYT_RS22665 and BPHYT_RS22670 are separated by 157 nucleotides BPHYT_RS22670 and BPHYT_RS22675 are separated by 190 nucleotides
BPHYT_RS22655: BPHYT_RS22655 - AraC family transcriptional regulator, at 640,131 to 640,898
_RS22655
BPHYT_RS22660: BPHYT_RS22660 - hypothetical protein, at 640,909 to 641,238
_RS22660
BPHYT_RS22665: BPHYT_RS22665 - hypothetical protein, at 641,360 to 641,620
_RS22665
BPHYT_RS22670: BPHYT_RS22670 - hypothetical protein, at 641,778 to 642,110
_RS22670
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 640.850 kb on + strand at 640.930 kb on + strand at 640.930 kb on + strand at 640.933 kb on + strand at 640.934 kb on - strand at 640.934 kb on - strand at 640.939 kb on + strand at 640.940 kb on - strand at 640.940 kb on - strand at 641.026 kb on + strand, within BPHYT_RS22660 at 641.026 kb on + strand, within BPHYT_RS22660 at 641.027 kb on - strand, within BPHYT_RS22660 at 641.073 kb on + strand, within BPHYT_RS22660 at 641.074 kb on - strand, within BPHYT_RS22660 at 641.098 kb on + strand, within BPHYT_RS22660 at 641.162 kb on - strand, within BPHYT_RS22660 at 641.313 kb on + strand at 641.362 kb on - strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.683 kb on + strand at 641.684 kb on - strand at 641.761 kb on + strand at 641.851 kb on + strand, within BPHYT_RS22670 at 642.110 kb on + strand at 642.111 kb on - strand at 642.203 kb on + strand at 642.423 kb on - strand at 642.462 kb on - strand at 642.472 kb on - strand at 642.533 kb on + strand, within BPHYT_RS22675 at 642.534 kb on - strand, within BPHYT_RS22675 at 642.536 kb on + strand, within BPHYT_RS22675 at 642.644 kb on + strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.645 kb on - strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.648 kb on + strand, within BPHYT_RS22675 at 642.649 kb on - strand, within BPHYT_RS22675 at 642.753 kb on - strand, within BPHYT_RS22675 at 642.793 kb on + strand, within BPHYT_RS22675
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 640,850 + -0.6 640,930 + +0.7 640,930 + -0.4 640,933 + -2.8 640,934 - -0.2 640,934 - -0.4 640,939 + -1.7 640,940 - +0.4 640,940 - -0.0 641,026 + BPHYT_RS22660 0.35 -0.4 641,026 + BPHYT_RS22660 0.35 -1.1 641,027 - BPHYT_RS22660 0.36 -1.5 641,073 + BPHYT_RS22660 0.50 +0.2 641,074 - BPHYT_RS22660 0.50 -1.0 641,098 + BPHYT_RS22660 0.57 -0.0 641,162 - BPHYT_RS22660 0.77 -1.8 641,313 + -0.0 641,362 - +0.2 641,683 + -1.1 641,683 + -0.5 641,683 + +0.7 641,684 - -1.0 641,761 + -0.3 641,851 + BPHYT_RS22670 0.22 -0.8 642,110 + -1.0 642,111 - -1.1 642,203 + +0.5 642,423 - -1.2 642,462 - -0.4 642,472 - +0.8 642,533 + BPHYT_RS22675 0.12 +1.0 642,534 - BPHYT_RS22675 0.12 -0.7 642,536 + BPHYT_RS22675 0.12 +0.9 642,644 + BPHYT_RS22675 0.18 -0.3 642,645 - BPHYT_RS22675 0.18 -0.9 642,645 - BPHYT_RS22675 0.18 -1.8 642,645 - BPHYT_RS22675 0.18 -0.6 642,645 - BPHYT_RS22675 0.18 -1.8 642,648 + BPHYT_RS22675 0.18 +1.7 642,648 + BPHYT_RS22675 0.18 -0.1 642,648 + BPHYT_RS22675 0.18 -0.3 642,649 - BPHYT_RS22675 0.18 -0.4 642,753 - BPHYT_RS22675 0.24 -0.7 642,793 + BPHYT_RS22675 0.26 -0.2
Or see this region's nucleotide sequence