Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22340

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22335 and BPHYT_RS22340 are separated by 58 nucleotides BPHYT_RS22335: BPHYT_RS22335 - cytochrome C biogenesis protein, at 564,132 to 566,012 _RS22335 BPHYT_RS22340: BPHYT_RS22340 - methionine sulfoxide reductase A, at 566,071 to 566,802 _RS22340 Position (kb) 566 567Strain fitness (log2 ratio) -2 -1 0 1at 565.207 kb on - strand, within BPHYT_RS22335at 565.336 kb on - strand, within BPHYT_RS22335at 565.650 kb on + strand, within BPHYT_RS22335at 566.041 kb on + strandat 566.042 kb on - strandat 566.359 kb on + strand, within BPHYT_RS22340at 566.701 kb on + strand, within BPHYT_RS22340at 567.485 kb on - strandat 567.485 kb on - strandat 567.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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565,207 - BPHYT_RS22335 0.57 +0.3
565,336 - BPHYT_RS22335 0.64 -2.5
565,650 + BPHYT_RS22335 0.81 +0.4
566,041 + +0.2
566,042 - -0.6
566,359 + BPHYT_RS22340 0.39 -0.4
566,701 + BPHYT_RS22340 0.86 -1.1
567,485 - +0.9
567,485 - -0.3
567,640 - -0.7

Or see this region's nucleotide sequence