Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21810 and BPHYT_RS21815 are separated by 69 nucleotides BPHYT_RS21815 and BPHYT_RS21820 are separated by 290 nucleotides BPHYT_RS21820 and BPHYT_RS21825 are separated by 384 nucleotides BPHYT_RS21825 and BPHYT_RS21830 are separated by 39 nucleotides
BPHYT_RS21810: BPHYT_RS21810 - histidine kinase, at 448,770 to 450,215
_RS21810
BPHYT_RS21815: BPHYT_RS21815 - hypothetical protein, at 450,285 to 450,557
_RS21815
BPHYT_RS21820: BPHYT_RS21820 - hypothetical protein, at 450,848 to 451,132
_RS21820
BPHYT_RS21825: BPHYT_RS21825 - chemotaxis protein CheY, at 451,517 to 451,903
_RS21825
BPHYT_RS21830: BPHYT_RS21830 - ArsR family transcriptional regulator, at 451,943 to 452,272
_RS21830
Position (kb) 450
451
452 Strain fitness (log2 ratio) -2
-1
0
1 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.990 kb on - strand, within BPHYT_RS21810 at 450.358 kb on - strand, within BPHYT_RS21815 at 450.860 kb on - strand at 451.143 kb on - strand at 451.192 kb on + strand at 451.403 kb on + strand at 451.536 kb on + strand at 451.537 kb on - strand at 451.592 kb on + strand, within BPHYT_RS21825 at 451.592 kb on + strand, within BPHYT_RS21825 at 451.593 kb on - strand, within BPHYT_RS21825 at 451.601 kb on + strand, within BPHYT_RS21825 at 451.602 kb on - strand, within BPHYT_RS21825 at 451.602 kb on - strand, within BPHYT_RS21825 at 451.743 kb on - strand, within BPHYT_RS21825 at 451.901 kb on + strand at 451.902 kb on - strand at 451.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 449,989 + BPHYT_RS21810 0.84 -0.1 449,989 + BPHYT_RS21810 0.84 -0.2 449,990 - BPHYT_RS21810 0.84 -1.8 450,358 - BPHYT_RS21815 0.27 -0.6 450,860 - -0.4 451,143 - +0.7 451,192 + -0.1 451,403 + -0.1 451,536 + -1.0 451,537 - +1.5 451,592 + BPHYT_RS21825 0.19 -0.1 451,592 + BPHYT_RS21825 0.19 +0.2 451,593 - BPHYT_RS21825 0.20 -1.1 451,601 + BPHYT_RS21825 0.22 -1.0 451,602 - BPHYT_RS21825 0.22 +0.5 451,602 - BPHYT_RS21825 0.22 +0.4 451,743 - BPHYT_RS21825 0.58 -0.4 451,901 + -0.4 451,902 - -0.0 451,902 - -0.0
Or see this region's nucleotide sequence