Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21595

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21590 and BPHYT_RS21595 are separated by 161 nucleotidesBPHYT_RS21595 and BPHYT_RS21600 are separated by 183 nucleotides BPHYT_RS21590: BPHYT_RS21590 - NmrA family transcriptional regulator, at 400,778 to 401,656 _RS21590 BPHYT_RS21595: BPHYT_RS21595 - TetR family transcriptional regulator, at 401,818 to 402,390 _RS21595 BPHYT_RS21600: BPHYT_RS21600 - 3-oxoacyl-ACP reductase, at 402,574 to 403,284 _RS21600 Position (kb) 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1at 401.077 kb on + strand, within BPHYT_RS21590at 401.784 kb on - strandat 401.791 kb on + strandat 402.110 kb on - strand, within BPHYT_RS21595at 402.173 kb on - strand, within BPHYT_RS21595at 402.461 kb on + strandat 402.522 kb on + strandat 402.792 kb on - strand, within BPHYT_RS21600at 403.034 kb on + strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.035 kb on - strand, within BPHYT_RS21600at 403.197 kb on - strand, within BPHYT_RS21600at 403.290 kb on - strandat 403.290 kb on - strandat 403.349 kb on + strandat 403.350 kb on - strandat 403.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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401,077 + BPHYT_RS21590 0.34 -0.8
401,784 - +0.1
401,791 + -0.8
402,110 - BPHYT_RS21595 0.51 +0.3
402,173 - BPHYT_RS21595 0.62 -1.3
402,461 + -0.6
402,522 + -0.1
402,792 - BPHYT_RS21600 0.31 -0.3
403,034 + BPHYT_RS21600 0.65 -2.8
403,035 - BPHYT_RS21600 0.65 -2.0
403,035 - BPHYT_RS21600 0.65 -1.2
403,035 - BPHYT_RS21600 0.65 +0.7
403,197 - BPHYT_RS21600 0.88 -0.8
403,290 - -0.2
403,290 - -1.3
403,349 + +0.8
403,350 - -0.8
403,380 + +0.7

Or see this region's nucleotide sequence