Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20805
Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 24hr PHYTO11 MOI 1 |
---|---|---|---|---|---|
remove | |||||
229,565 | + | BPHYT_RS20800 | 0.55 | -1.1 | |
229,565 | + | BPHYT_RS20800 | 0.55 | -1.0 | |
229,565 | + | BPHYT_RS20800 | 0.55 | +0.7 | |
229,791 | + | BPHYT_RS20800 | 0.68 | +0.5 | |
230,020 | - | BPHYT_RS20800 | 0.82 | -0.0 | |
230,369 | - | +0.4 | |||
230,817 | + | BPHYT_RS20805 | 0.34 | -0.9 | |
230,817 | + | BPHYT_RS20805 | 0.34 | -1.7 | |
230,818 | - | BPHYT_RS20805 | 0.35 | +0.3 | |
232,142 | - | BPHYT_RS20810 | 0.58 | +0.6 | |
232,289 | + | BPHYT_RS20810 | 0.73 | -0.8 | |
232,290 | - | BPHYT_RS20810 | 0.73 | -0.9 |
Or see this region's nucleotide sequence