Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20205 and BPHYT_RS20210 overlap by 1 nucleotides BPHYT_RS20210 and BPHYT_RS20215 are separated by 474 nucleotides
BPHYT_RS20205: BPHYT_RS20205 - alcohol dehydrogenase, at 78,863 to 80,023
_RS20205
BPHYT_RS20210: BPHYT_RS20210 - antibiotic biosynthesis monooxygenase, at 80,023 to 80,331
_RS20210
BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477
_RS20215
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 79.098 kb on - strand, within BPHYT_RS20205 at 79.098 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.653 kb on + strand, within BPHYT_RS20205 at 79.654 kb on - strand, within BPHYT_RS20205 at 79.654 kb on - strand, within BPHYT_RS20205 at 80.046 kb on + strand at 80.167 kb on + strand, within BPHYT_RS20210 at 80.318 kb on + strand at 80.319 kb on - strand at 80.319 kb on - strand at 80.355 kb on + strand at 80.426 kb on + strand at 80.506 kb on + strand at 80.507 kb on - strand at 80.685 kb on - strand at 80.722 kb on + strand at 80.723 kb on - strand at 80.806 kb on - strand at 80.806 kb on - strand at 81.094 kb on + strand, within BPHYT_RS20215 at 81.094 kb on + strand, within BPHYT_RS20215 at 81.095 kb on - strand, within BPHYT_RS20215
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 79,098 - BPHYT_RS20205 0.20 -0.4 79,098 - BPHYT_RS20205 0.20 -0.7 79,411 - BPHYT_RS20205 0.47 -0.3 79,411 - BPHYT_RS20205 0.47 -3.2 79,411 - BPHYT_RS20205 0.47 -1.5 79,411 - BPHYT_RS20205 0.47 -1.3 79,653 + BPHYT_RS20205 0.68 +0.4 79,654 - BPHYT_RS20205 0.68 +0.9 79,654 - BPHYT_RS20205 0.68 +0.3 80,046 + +0.2 80,167 + BPHYT_RS20210 0.47 -0.8 80,318 + +1.1 80,319 - -0.0 80,319 - +0.7 80,355 + +1.0 80,426 + -0.2 80,506 + +0.3 80,507 - -0.3 80,685 - +0.3 80,722 + -0.9 80,723 - -0.1 80,806 - -1.3 80,806 - -0.0 81,094 + BPHYT_RS20215 0.43 +0.2 81,094 + BPHYT_RS20215 0.43 -0.6 81,095 - BPHYT_RS20215 0.43 +0.6
Or see this region's nucleotide sequence