Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18465

Experiment: 24hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO11 MOI 1
4,149,734	+		BPHYT_RS18460	0.79	+0.8
4,149,735	-		BPHYT_RS18460	0.79	+0.7
4,149,766	+		BPHYT_RS18460	0.81	+0.1
4,149,767	-		BPHYT_RS18460	0.81	-0.1
4,149,789	+		BPHYT_RS18460	0.82	+0.2
4,149,789	+		BPHYT_RS18460	0.82	-1.1
4,149,790	-		BPHYT_RS18460	0.82	+0.4
4,149,790	-		BPHYT_RS18460	0.82	+0.1
4,149,825	+		BPHYT_RS18460	0.84	+0.0
4,149,825	+		BPHYT_RS18460	0.84	-0.4
4,149,826	-		BPHYT_RS18460	0.84	-0.3
4,149,829	+		BPHYT_RS18460	0.84	-1.3
4,149,911	+		BPHYT_RS18460	0.89	-1.1
4,149,912	-		BPHYT_RS18460	0.89	-2.3
4,149,983	+				+0.0
4,149,997	+				-0.6
4,150,071	+				-0.9
4,150,071	+				+0.1
4,150,109	+				-0.8
4,150,109	+				-0.3
4,150,110	-				-0.4
4,150,173	+				+0.6
4,150,173	+				+1.1
4,150,278	-				-0.0
4,150,278	-				-1.4
4,150,437	+		BPHYT_RS18465	0.17	+0.0
4,150,508	+		BPHYT_RS18465	0.23	-0.8
4,150,509	-		BPHYT_RS18465	0.23	+3.1
4,150,707	+		BPHYT_RS18465	0.38	-0.3
4,150,708	-		BPHYT_RS18465	0.39	+0.5
4,150,764	+		BPHYT_RS18465	0.43	-1.1
4,150,764	+		BPHYT_RS18465	0.43	-1.4
4,150,820	+		BPHYT_RS18465	0.47	-1.5
4,150,932	-		BPHYT_RS18465	0.56	-2.3
4,150,972	+		BPHYT_RS18465	0.59	-0.4
4,151,070	+		BPHYT_RS18465	0.67	-1.5
4,151,155	+		BPHYT_RS18465	0.74	-0.9
4,151,156	-		BPHYT_RS18465	0.74	-0.5
4,151,208	+		BPHYT_RS18465	0.78	-1.0
4,151,209	-		BPHYT_RS18465	0.78	-1.4
4,151,237	+		BPHYT_RS18465	0.80	-1.8
4,151,238	-		BPHYT_RS18465	0.81	-1.7
4,151,260	-		BPHYT_RS18465	0.82	-2.5
4,151,260	-		BPHYT_RS18465	0.82	-1.1
4,151,275	+		BPHYT_RS18465	0.83	-0.5
4,151,276	-		BPHYT_RS18465	0.84	-1.2
4,151,276	-		BPHYT_RS18465	0.84	-0.4
4,151,380	+				-0.2
4,151,447	+				-0.6
4,151,452	+				-0.4
4,151,453	-				-0.6
4,151,465	-				-0.6
4,151,479	+				-1.5
4,151,481	+				-0.2
4,151,589	+				+1.0
4,151,658	-				-1.1
4,151,658	-				-0.5
4,151,658	-				-2.5
4,151,658	-				+1.1
4,151,676	-				+0.5
4,151,676	-				-1.9
4,151,751	+				-0.5
4,151,751	+				+0.0
4,151,752	-				+0.0
4,151,850	+				-0.2
4,151,850	+				-0.2
4,151,850	+				+0.3
4,151,851	-				-0.8
4,151,851	-				-0.0
4,151,921	-				-1.4
4,151,978	+		BPHYT_RS18470	0.16	+0.1
4,152,006	-		BPHYT_RS18470	0.21	+0.2
4,152,029	+		BPHYT_RS18470	0.25	+0.3
4,152,030	-		BPHYT_RS18470	0.25	+0.1
4,152,102	+		BPHYT_RS18470	0.37	-0.6
4,152,171	-		BPHYT_RS18470	0.48	-1.2
4,152,280	-		BPHYT_RS18470	0.66	-1.0
4,152,341	+		BPHYT_RS18470	0.76	-0.8