Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15850

Experiment: 24hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO11 MOI 1
3,597,748	-		BPHYT_RS15845	0.40	+0.1
3,597,901	+		BPHYT_RS15845	0.51	+1.3
3,597,991	+		BPHYT_RS15845	0.57	+0.7
3,597,991	+		BPHYT_RS15845	0.57	-0.6
3,597,992	-		BPHYT_RS15845	0.57	-0.5
3,597,992	-		BPHYT_RS15845	0.57	-0.8
3,598,582	-				+0.3
3,598,764	+				-0.8
3,598,765	-				-2.9
3,598,765	-				-0.6
3,598,765	-				-0.6
3,598,765	-				-0.8
3,598,848	+				+1.1
3,598,849	-				+0.5
3,598,849	-				+1.1
3,598,878	+				-0.2
3,598,879	-				-1.5
3,598,879	-				-0.7
3,599,065	-		BPHYT_RS15850	0.19	-0.2
3,599,068	-		BPHYT_RS15850	0.19	+0.1
3,599,082	+		BPHYT_RS15850	0.20	-0.8
3,599,082	+		BPHYT_RS15850	0.20	-1.1
3,599,083	-		BPHYT_RS15850	0.20	-0.3
3,599,120	-		BPHYT_RS15850	0.22	-0.2
3,599,140	+		BPHYT_RS15850	0.23	-1.6
3,599,190	+		BPHYT_RS15850	0.26	-0.1
3,599,190	+		BPHYT_RS15850	0.26	-2.3
3,599,190	+		BPHYT_RS15850	0.26	-1.3
3,599,190	+		BPHYT_RS15850	0.26	-1.5
3,599,190	+		BPHYT_RS15850	0.26	+0.0
3,599,190	+		BPHYT_RS15850	0.26	-0.4
3,599,190	+		BPHYT_RS15850	0.26	+0.4
3,599,191	-		BPHYT_RS15850	0.26	+0.6
3,599,191	-		BPHYT_RS15850	0.26	+0.5
3,599,191	-		BPHYT_RS15850	0.26	-1.2
3,599,191	-		BPHYT_RS15850	0.26	-0.5
3,599,191	-		BPHYT_RS15850	0.26	+1.0
3,599,194	+		BPHYT_RS15850	0.26	-0.1
3,599,194	+		BPHYT_RS15850	0.26	-0.8
3,599,194	+		BPHYT_RS15850	0.26	-1.2
3,599,195	-		BPHYT_RS15850	0.26	-1.7
3,599,195	-		BPHYT_RS15850	0.26	-1.1
3,599,195	-		BPHYT_RS15850	0.26	+0.1
3,599,195	-		BPHYT_RS15850	0.26	+0.0
3,599,195	-		BPHYT_RS15850	0.26	-1.3
3,599,334	+		BPHYT_RS15850	0.34	+0.0
3,599,334	+		BPHYT_RS15850	0.34	+0.2
3,599,334	+		BPHYT_RS15850	0.34	-0.3
3,599,454	+				-0.9
3,599,455	-		BPHYT_RS15850	0.41	-1.1
3,599,455	-		BPHYT_RS15850	0.41	-0.3
3,599,455	-		BPHYT_RS15850	0.41	+0.5
3,599,565	+		BPHYT_RS15850	0.47	-0.7
3,599,566	-		BPHYT_RS15850	0.47	+1.3
3,599,566	-		BPHYT_RS15850	0.47	-0.7
3,599,566	-		BPHYT_RS15850	0.47	+0.3
3,599,622	+		BPHYT_RS15850	0.50	-1.2
3,599,622	+		BPHYT_RS15850	0.50	+0.4
3,599,622	+		BPHYT_RS15850	0.50	-0.1
3,599,623	-		BPHYT_RS15850	0.50	-0.4
3,599,623	-		BPHYT_RS15850	0.50	+0.7
3,599,623	-		BPHYT_RS15850	0.50	-1.3
3,599,623	-		BPHYT_RS15850	0.50	+0.1
3,599,623	-		BPHYT_RS15850	0.50	-0.4
3,599,623	-		BPHYT_RS15850	0.50	+0.9
3,599,683	+		BPHYT_RS15850	0.54	-2.0
3,599,684	-		BPHYT_RS15850	0.54	-1.3
3,599,835	+		BPHYT_RS15850	0.62	+0.4
3,599,835	+		BPHYT_RS15850	0.62	-0.7
3,599,884	+		BPHYT_RS15850	0.65	-0.7
3,599,885	-		BPHYT_RS15850	0.65	-1.5
3,599,885	-		BPHYT_RS15850	0.65	-0.3
3,599,997	+		BPHYT_RS15850	0.71	+0.8
3,599,997	+		BPHYT_RS15850	0.71	-0.5
3,600,004	+		BPHYT_RS15850	0.72	-0.3
3,600,244	+		BPHYT_RS15850	0.85	-0.6
3,600,245	-		BPHYT_RS15850	0.85	-1.1
3,600,446	+				+0.6
3,600,447	-				+1.9
3,600,631	+				-0.1
3,600,632	-				+0.5
3,600,632	-				-0.8
3,600,653	-				-0.4
3,600,663	-				+0.6
3,600,776	+				+0.3
3,600,777	-				-0.4
3,600,794	+				-2.0
3,600,794	+				+2.1
3,600,794	+				+0.2
3,600,795	-				-0.3
3,600,795	-				-0.3
3,600,795	-				-1.1
3,600,795	-				-1.1
3,600,839	+		BPHYT_RS15855	0.12	-1.3
3,600,840	-		BPHYT_RS15855	0.12	-0.1
3,600,840	-		BPHYT_RS15855	0.12	+0.2
3,600,840	-		BPHYT_RS15855	0.12	-0.3
3,600,840	-		BPHYT_RS15855	0.12	-1.6
3,600,857	+		BPHYT_RS15855	0.15	-1.4
3,600,875	+		BPHYT_RS15855	0.18	+0.3
3,600,875	+		BPHYT_RS15855	0.18	-0.4
3,600,945	-		BPHYT_RS15855	0.30	-0.8
3,601,114	-		BPHYT_RS15855	0.59	-0.1
3,601,170	-		BPHYT_RS15855	0.69	-1.8
3,601,190	+		BPHYT_RS15855	0.73	-0.3
3,601,191	-		BPHYT_RS15855	0.73	-0.3
3,601,378	+				+0.1
3,601,378	+				+0.8
3,601,378	+				-1.3
3,601,378	+				+0.6
3,601,379	-				+0.1
3,601,383	+				+0.3
3,601,416	-				-2.8
3,601,419	+				+0.2
3,601,419	+				+0.4
3,601,420	-				-1.4
3,601,420	-				-0.7