Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14670

Experiment: 24hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO11 MOI 1
3,341,621	-		BPHYT_RS14660	0.81	-0.3
3,341,650	+		BPHYT_RS14660	0.87	-1.2
3,341,701	-				-1.7
3,341,788	+				-1.0
3,341,788	+				-0.6
3,341,788	+				-0.8
3,341,788	+				-1.0
3,341,788	+				+2.5
3,341,789	-				-0.7
3,341,789	-				-0.1
3,341,789	-				-2.3
3,342,258	+		BPHYT_RS14665	0.86	+0.7
3,342,258	+		BPHYT_RS14665	0.86	-1.2
3,342,259	-		BPHYT_RS14665	0.86	+0.4
3,342,769	+		BPHYT_RS14670	0.69	-1.5
3,342,970	+				+0.0
3,342,971	-				-1.4
3,343,065	-				+0.2
3,343,065	-				-0.5
3,343,065	-				-0.4
3,343,124	+				-1.1
3,343,124	+				-0.2
3,343,124	+				-0.3
3,343,125	-				-0.3
3,343,125	-				+0.9
3,343,220	+		BPHYT_RS14675	0.17	+0.2
3,343,221	-		BPHYT_RS14675	0.17	-0.5
3,343,222	+		BPHYT_RS14675	0.17	-0.5
3,343,247	+		BPHYT_RS14675	0.19	+0.2
3,343,248	-		BPHYT_RS14675	0.19	-0.3
3,343,258	+		BPHYT_RS14675	0.19	-0.3
3,343,258	+		BPHYT_RS14675	0.19	-0.7
3,343,258	+		BPHYT_RS14675	0.19	+1.5
3,343,259	-		BPHYT_RS14675	0.19	-0.2
3,343,259	-		BPHYT_RS14675	0.19	+0.1
3,343,259	-		BPHYT_RS14675	0.19	-0.6
3,343,259	-		BPHYT_RS14675	0.19	+0.3
3,343,341	-		BPHYT_RS14675	0.25	+0.3
3,343,358	+		BPHYT_RS14675	0.27	+0.1
3,343,358	+		BPHYT_RS14675	0.27	+3.7
3,343,364	+		BPHYT_RS14675	0.27	-1.4
3,343,364	+		BPHYT_RS14675	0.27	-0.5
3,343,365	-		BPHYT_RS14675	0.27	-1.3
3,343,400	+		BPHYT_RS14675	0.30	+1.2
3,343,502	+		BPHYT_RS14675	0.37	+0.5
3,343,502	+		BPHYT_RS14675	0.37	+0.9
3,343,502	+		BPHYT_RS14675	0.37	-0.0
3,343,502	+		BPHYT_RS14675	0.37	+1.6
3,343,503	-		BPHYT_RS14675	0.37	+0.2
3,343,503	-		BPHYT_RS14675	0.37	-0.0
3,343,509	-		BPHYT_RS14675	0.37	-0.5
3,343,509	-		BPHYT_RS14675	0.37	-2.3
3,343,592	+		BPHYT_RS14675	0.43	-0.2
3,343,612	-		BPHYT_RS14675	0.45	-0.2
3,343,664	+		BPHYT_RS14675	0.48	-0.4