Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09335

Experiment: 24hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO11 MOI 1
2,116,486	+		BPHYT_RS09330	0.26	+2.8
2,116,487	-		BPHYT_RS09330	0.26	+2.2
2,116,506	+		BPHYT_RS09330	0.29	+2.2
2,116,506	+		BPHYT_RS09330	0.29	+2.1
2,116,508	+		BPHYT_RS09330	0.29	+1.6
2,116,509	-		BPHYT_RS09330	0.29	+2.2
2,116,569	+		BPHYT_RS09330	0.36	+2.1
2,116,570	-		BPHYT_RS09330	0.36	+2.3
2,116,571	+		BPHYT_RS09330	0.36	+2.2
2,116,571	+		BPHYT_RS09330	0.36	+2.2
2,116,571	+		BPHYT_RS09330	0.36	+2.2
2,116,571	+		BPHYT_RS09330	0.36	+2.0
2,116,572	-		BPHYT_RS09330	0.37	+2.0
2,116,731	-		BPHYT_RS09330	0.56	+1.9
2,116,731	-		BPHYT_RS09330	0.56	+2.3
2,116,757	+		BPHYT_RS09330	0.59	+2.4
2,116,758	-		BPHYT_RS09330	0.59	+2.3
2,116,758	-		BPHYT_RS09330	0.59	+2.7
2,116,758	-		BPHYT_RS09330	0.59	+2.5
2,116,826	-		BPHYT_RS09330	0.67	+1.8
2,116,839	-		BPHYT_RS09330	0.69	+2.0
2,117,036	+				+2.1
2,117,039	+				+2.2
2,117,039	+				+2.1
2,117,040	-				+1.9
2,117,040	-				+1.4
2,117,040	-				+2.3
2,117,040	-				+2.0
2,117,044	-				+2.0
2,117,078	+				+2.0
2,117,079	-				+1.3
2,117,163	+				+0.0
2,117,439	+				-1.3
2,117,611	+				+0.4
2,117,648	-				+0.5
2,117,800	+		BPHYT_RS09340	0.23	-1.2
2,117,801	-		BPHYT_RS09340	0.23	+0.5
2,117,881	+		BPHYT_RS09340	0.35	-1.0
2,117,881	+		BPHYT_RS09340	0.35	+1.2
2,117,881	+		BPHYT_RS09340	0.35	-0.3
2,117,882	-		BPHYT_RS09340	0.35	-1.0
2,117,882	-		BPHYT_RS09340	0.35	+0.4
2,117,882	-		BPHYT_RS09340	0.35	+0.3
2,118,019	+		BPHYT_RS09340	0.57	-0.8
2,118,020	-		BPHYT_RS09340	0.57	+1.2
2,118,049	+		BPHYT_RS09340	0.61	-0.1
2,118,243	+				-1.5
2,118,335	-				-0.4
2,118,365	+				+0.2
2,118,365	+				-0.7
2,118,365	+				-0.4
2,118,366	-				+2.2
2,118,366	-				+0.2
2,118,366	-				-0.5
2,118,402	+				-0.1
2,118,402	+				+0.5
2,118,403	-				-1.3
2,118,403	-				+1.2