Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07675

Experiment: 24hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07670 and BPHYT_RS07675 are separated by 269 nucleotidesBPHYT_RS07675 and BPHYT_RS07680 are separated by 4 nucleotidesBPHYT_RS07680 and BPHYT_RS07685 are separated by 81 nucleotides BPHYT_RS07670: BPHYT_RS07670 - patatin, at 1,745,728 to 1,746,681 _RS07670 BPHYT_RS07675: BPHYT_RS07675 - ABC transporter for L-Arginine, permease component 2 (from data), at 1,746,951 to 1,747,640 _RS07675 BPHYT_RS07680: BPHYT_RS07680 - ABC transporter for L-Arginine, permease component 1 (from data), at 1,747,645 to 1,748,358 _RS07680 BPHYT_RS07685: BPHYT_RS07685 - ABC transporter for L-Arginine, putative ATPase component (from data), at 1,748,440 to 1,749,231 _RS07685 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -3 -2 -1 0 1at 1746.643 kb on - strandat 1746.712 kb on + strandat 1746.960 kb on + strandat 1747.109 kb on + strand, within BPHYT_RS07675at 1747.109 kb on + strand, within BPHYT_RS07675at 1747.555 kb on - strand, within BPHYT_RS07675at 1747.834 kb on + strand, within BPHYT_RS07680at 1747.834 kb on + strand, within BPHYT_RS07680at 1747.835 kb on - strand, within BPHYT_RS07680at 1747.858 kb on + strand, within BPHYT_RS07680at 1747.879 kb on + strand, within BPHYT_RS07680at 1747.880 kb on - strand, within BPHYT_RS07680at 1747.891 kb on + strand, within BPHYT_RS07680at 1747.891 kb on + strand, within BPHYT_RS07680at 1748.132 kb on - strand, within BPHYT_RS07680at 1748.234 kb on - strand, within BPHYT_RS07680at 1748.234 kb on - strand, within BPHYT_RS07680at 1748.273 kb on - strand, within BPHYT_RS07680at 1748.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1
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1,746,643 - -0.4
1,746,712 + -0.6
1,746,960 + +0.8
1,747,109 + BPHYT_RS07675 0.23 -0.1
1,747,109 + BPHYT_RS07675 0.23 -2.9
1,747,555 - BPHYT_RS07675 0.88 -1.0
1,747,834 + BPHYT_RS07680 0.26 -2.6
1,747,834 + BPHYT_RS07680 0.26 +0.6
1,747,835 - BPHYT_RS07680 0.27 +1.0
1,747,858 + BPHYT_RS07680 0.30 +1.6
1,747,879 + BPHYT_RS07680 0.33 +0.8
1,747,880 - BPHYT_RS07680 0.33 -2.2
1,747,891 + BPHYT_RS07680 0.34 -1.0
1,747,891 + BPHYT_RS07680 0.34 -0.8
1,748,132 - BPHYT_RS07680 0.68 +0.7
1,748,234 - BPHYT_RS07680 0.82 +0.2
1,748,234 - BPHYT_RS07680 0.82 -0.7
1,748,273 - BPHYT_RS07680 0.88 +0.6
1,748,336 - +0.5

Or see this region's nucleotide sequence